Search Results - "Burge CB"

Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.

Authors: Moore JE Purcaro MJ Pratt HE et al.

Corporate Authors: Moore JE Purcaro MJ Pratt HE et al.

Source: Nature [Nature] 2022 May; Vol. 605 (7909), pp. E3.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE; PubMed not MEDLINE

Author Correction: A large-scale binding and functional map of human RNA-binding proteins.

Authors: Van Nostrand EL Freese P Pratt GA et al.

Source: Nature [Nature] 2021 Jan; Vol. 589 (7842), pp. E5.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE; PubMed not MEDLINE

Widespread naturally variable human exons aid genetic interpretation.

Authors: Jacobs HN Gorissen BL Guez J et al.

Source: Nature communications [Nat Commun] 2025 Dec 16; Vol. 16 (1), pp. 11345. Date of Electronic Publication: 2025 Dec 16.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

KATMAP infers splicing factor activity and regulatory targets from knockdown data.

Authors: McGurk MP McWatters DC Burge CB

Source: Nature biotechnology [Nat Biotechnol] 2025 Nov 04. Date of Electronic Publication: 2025 Nov 04.

Publication Type: Journal Article

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

Salty Battle to Sudden Death: Young vs. Old, Brain vs. Heart.

Authors: Iyer, Shruthi H. Simeone, Kristina A.

Source: Epilepsy Currents. Nov/Dec2024, Vol. 24 Issue 6, p437-439. 3p.

Systematic identification of disease-causing promoter and untranslated region variants in 8040 undiagnosed individuals with rare disease.

Authors: Martin-Geary AC Blakes AJM Dawes R et al.

Source: Genome medicine [Genome Med] 2025 Apr 14; Vol. 17 (1), pp. 40. Date of Electronic Publication: 2025 Apr 14.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-994X (Electronic) Linking ISSN: 1756994X NLM ISO Abbreviation: Genome Med Subsets: MEDLINE

LUC7 proteins define two major classes of 5' splice sites in animals and plants.

Authors: Kenny CJ McGurk MP Schüler S et al.

Source: Nature communications [Nat Commun] 2025 Feb 20; Vol. 16 (1), pp. 1574. Date of Electronic Publication: 2025 Feb 20.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Regulatory features aid interpretation of 3'UTR variants.

Authors: Romo L Findlay SD Burge CB

Source: American journal of human genetics [Am J Hum Genet] 2024 Feb 01; Vol. 111 (2), pp. 350-363. Date of Electronic Publication: 2024 Jan 17.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0370475 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1537-6605 (Electronic) Linking ISSN: 00029297 NLM ISO Abbreviation: Am J Hum Genet Subsets: MEDLINE

Understanding species-specific and conserved RNA-protein interactions in vivo and in vitro.

Authors: Harris SE Alexis MS Giri G et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Jan 30. Date of Electronic Publication: 2024 Jan 30.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Splicing quality control mediated by DHX15 and its G-patch activator SUGP1.

Authors: Feng Q Krick K Chu J et al.

Source: Cell reports [Cell Rep] 2023 Oct 31; Vol. 42 (10), pp. 113223. Date of Electronic Publication: 2023 Oct 08.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

Regulatory features aid interpretation of 3'UTR Variants.

Authors: Romo L Findlay SD Burge CB

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Aug 02. Date of Electronic Publication: 2023 Aug 02.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Numerous recursive sites contribute to accuracy of splicing in long introns in flies.

Authors: Pai AA Paggi JM Yan P et al.

Source: PLoS genetics [PLoS Genet] 2018 Aug 27; Vol. 14 (8), pp. e1007588. Date of Electronic Publication: 2018 Aug 27 (Print Publication: 2018).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE

Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection.

Authors: Pai AA Baharian G Pagé Sabourin A et al.

Source: PLoS genetics [PLoS Genet] 2016 Sep 30; Vol. 12 (9), pp. e1006338. Date of Electronic Publication: 2016 Sep 30 (Print Publication: 2016).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet

Loss of LUC7L2 and U1 snRNP subunits shifts energy metabolism from glycolysis to OXPHOS.

Authors: Jourdain AA Begg BE Mick E et al.

Source: Molecular cell [Mol Cell] 2021 May 06; Vol. 81 (9), pp. 1905-1919.e12. Date of Electronic Publication: 2021 Apr 13.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4164 (Electronic) Linking ISSN: 10972765 NLM ISO Abbreviation: Mol Cell Subsets: MEDLINE

Alternative splicing of RNA triplets is often regulated and accelerates proteome evolution.

Authors: Bradley RK Merkin J Lambert NJ et al.

Source: PLoS biology [PLoS Biol] 2012 Jan; Vol. 10 (1), pp. e1001229. Date of Electronic Publication: 2012 Jan 03.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

An EMT-driven alternative splicing program occurs in human breast cancer and modulates cellular phenotype.

Authors: Shapiro IM Cheng AW Flytzanis NC et al.

Source: PLoS genetics [PLoS Genet] 2011 Aug; Vol. 7 (8), pp. e1002218. Date of Electronic Publication: 2011 Aug 18.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE

A latent pro-survival function for the mir-290-295 cluster in mouse embryonic stem cells.

Authors: Zheng GX Ravi A Calabrese JM et al.

Source: PLoS genetics [PLoS Genet] 2011 May; Vol. 7 (5), pp. e1002054. Date of Electronic Publication: 2011 May 05.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE

Inference of splicing regulatory activities by sequence neighborhood analysis.

Authors: Stadler MB Shomron N Yeo GW et al.

Source: PLoS genetics [PLoS Genet] 2006 Nov 24; Vol. 2 (11), pp. e191. Date of Electronic Publication: 2006 Sep 28.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE

Patterns of intron gain and loss in fungi.

Authors: Nielsen CB Friedman B Birren B et al.

Source: PLoS biology [PLoS Biol] 2004 Dec; Vol. 2 (12), pp. e422. Date of Electronic Publication: 2004 Nov 30.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

Single nucleotide polymorphism-based validation of exonic splicing enhancers.

Authors: Fairbrother WG Holste D Burge CB et al.

Source: PLoS biology [PLoS Biol] 2004 Sep; Vol. 2 (9), pp. E268. Date of Electronic Publication: 2004 Aug 31.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE