Search Results - "AMINO acid sequence"

Inferring context-specific site variation with evotuned protein language models.

Authors: Lytras S Strange A Ito J et al.

Source: NAR genomics and bioinformatics [NAR Genom Bioinform] 2026 Feb 09; Vol. 8 (1), pp. lqag018. Date of Electronic Publication: 2026 Feb 09 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: MEDLINE

Inferring Local Protein Structural Similarity from Sequence Alone.

Authors: Ma Z Espinoza Herrera J Buitrago-Delgado E et al.

Source: Journal of chemical information and modeling [J Chem Inf Model] 2026 May 25; Vol. 66 (10), pp. 5699-5707. Date of Electronic Publication: 2026 May 02.

Publication Type: Journal Article

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101230060 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-960X (Electronic) Linking ISSN: 15499596 NLM ISO Abbreviation: J Chem Inf Model Subsets: MEDLINE

Mind the gap: An embedding guide to safely travel in sequence space.

Authors: Wu A Lála J Trolliet Q et al.

Source: PLoS computational biology [PLoS Comput Biol] 2026 Jul 09; Vol. 22 (7), pp. e1014433. Date of Electronic Publication: 2026 Jul 09 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Humans and rhesus macaques share maturation pathways of HIV-1 envelope-reactive V3-glycan bnAb lineages.

Authors: Clark M Li H Martin M et al.

Source: Science translational medicine [Sci Transl Med] 2026 Jul 08; Vol. 18 (857), pp. eaee9864. Date of Electronic Publication: 2026 Jul 08.

Publication Type: Journal Article

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 101505086 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1946-6242 (Electronic) Linking ISSN: 19466234 NLM ISO Abbreviation: Sci Transl Med Subsets: MEDLINE

Analysis and design of disordered polypeptides with optimized sequence patterning properties.

Authors: Singh A Ukperaj AI Porto GF et al.

Source: PLoS computational biology [PLoS Comput Biol] 2026 Jul 08; Vol. 22 (7), pp. e1014462. Date of Electronic Publication: 2026 Jul 08 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Preparation and Application of an Antibody Specifically Targeting Tyrosine-Phosphorylated PI3K p85 at Position 452.

Authors: Zhang D Wang S Chi Y

Source: Clinical laboratory [Clin Lab] 2026 Jul 01; Vol. 72 (7).

Publication Type: Journal Article

Journal Info: Publisher: Clinical Laboratory Publications Country of Publication: Germany NLM ID: 9705611 Publication Model: Print Cited Medium: Internet ISSN: 1433-6510 (Print) Linking ISSN: 14336510 NLM ISO Abbreviation: Clin Lab Subsets: MEDLINE

The EF-hand domain of MINDY3 is a ubiquitin and RAD23 UBL-binding domain.

Authors: Armstrong LA McFarland MR O'Dea R et al.

Source: EMBO reports [EMBO Rep] 2026 Jul; Vol. 27 (13), pp. 3604-3631. Date of Electronic Publication: 2026 Jun 09.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 100963049 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-3178 (Electronic) Linking ISSN: 1469221X NLM ISO Abbreviation: EMBO Rep Subsets: MEDLINE

Modeling of phosphorylated forms of complement system factors C4 and CFB.

Authors: Nikolsky KS Petrovskiy DV Kulikova LI et al.

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 Jul; Vol. 44 (10), pp. 4884-4899. Date of Electronic Publication: 2025 Jun 30.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Chameleon sequences reveal structural effects in proteins representing micelle-like distribution of hydrophobicity.

Authors: Roterman I Stapor K Konieczny L et al.

Source: FEBS open bio [FEBS Open Bio] 2026 Jul; Vol. 16 (7), pp. 1340-1357. Date of Electronic Publication: 2026 Feb 17.

Publication Type: Journal Article

Journal Info: Publisher: John Wiley & Sons Ltd Country of Publication: England NLM ID: 101580716 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-5463 (Electronic) Linking ISSN: 22115463 NLM ISO Abbreviation: FEBS Open Bio Subsets: MEDLINE

Cocaine- and amphetamine-regulated transcripts in two percomorphs: evolutionary conservation and energy-status dependent responses.

Authors: Cabillon NAR Koch L Mizrahi N et al.

Source: Frontiers in endocrinology [Front Endocrinol (Lausanne)] 2026 Jun 30; Vol. 17, pp. 1870522. Date of Electronic Publication: 2026 Jun 30 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101555782 Publication Model: eCollection Cited Medium: Print ISSN: 1664-2392 (Print) Linking ISSN: 16642392 NLM ISO Abbreviation: Front Endocrinol (Lausanne) Subsets: MEDLINE

In silico-predicted B-cell epitopes for bovine brucellosis serodiagnosis: Preliminary analytical evaluation of synthetic peptide- and multi-epitope protein-based indirect ELISAs.

Authors: de Souza LDR Souza MFS Lima PA et al.

Source: PloS one [PLoS One] 2026 Jun 30; Vol. 21 (6), pp. e0352788. Date of Electronic Publication: 2026 Jun 30 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Bioinformatics classification of the MgtE Mg ^{2 +} channel and de novo protein design for the stabilization of its novel subclass.

Authors: Zhao Z Omae K Iwasaki W et al.

Source: Acta biochimica et biophysica Sinica [Acta Biochim Biophys Sin (Shanghai)] 2026 Jun 25; Vol. 58 (6), pp. 1402-1412.

Publication Type: Journal Article

Journal Info: Publisher: China Science Publishing & Media Ltd Country of Publication: China NLM ID: 101206716 Publication Model: Print Cited Medium: Internet ISSN: 1745-7270 (Electronic) Linking ISSN: 16729145 NLM ISO Abbreviation: Acta Biochim Biophys Sin (Shanghai) Subsets: MEDLINE

Design and evaluation of a novel fusion antigen for diagnosing human strongyloidiasis: An immunoinformatics approach.

Authors: Asadi M Taghvimi S Ghaznavi G et al.

Source: PloS one [PLoS One] 2026 Jun 25; Vol. 21 (6), pp. e0351189. Date of Electronic Publication: 2026 Jun 25 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Structural basis of βKNL2 centromeric targeting mechanism and its role in plant-specific kinetochore assembly.

Authors: Yadala R Camara AS Yalagapati SP et al.

Source: Nucleic acids research [Nucleic Acids Res] 2026 Jun 22; Vol. 54 (12).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Discovery and Putative Perception Mechanisms of Novel Umami Peptides from Ruditapes philippinarum Cooking Liquid: In Silico Screening, Molecular Docking, Sensory Evaluation, and STC-1 Cell-Based Validation.

Authors: Wang R Sun Q Zhang S et al.

Source: Molecules (Basel, Switzerland) [Molecules] 2026 Jun 22; Vol. 31 (12). Date of Electronic Publication: 2026 Jun 22.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 100964009 Publication Model: Electronic Cited Medium: Internet ISSN: 1420-3049 (Electronic) Linking ISSN: 14203049 NLM ISO Abbreviation: Molecules Subsets: MEDLINE

Comprehensive mapping of identical sequences across human proteins emphasizes the widespread issue of shared epitopes in self-antigens.

Authors: Kellermann G Croce O Mograbi B et al.

Source: NAR genomics and bioinformatics [NAR Genom Bioinform] 2026 Jun 22; Vol. 8 (2), pp. lqag060. Date of Electronic Publication: 2026 Jun 22 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: MEDLINE

Genome-Wide Identification, Expression, and Functional Analysis of UDP-Glucose Dehydrogenase Family Genes in Rhus chinensis.

Authors: Ba G Hu K Wang Y et al.

Source: Genes [Genes (Basel)] 2026 Jun 18; Vol. 17 (6). Date of Electronic Publication: 2026 Jun 18.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE

Reverse engineering of BNIP3 identifies a mitochondrial protective peptide.

Authors: Hendgen-Cotta UB Roth A Beuck C et al.

Source: Nature communications [Nat Commun] 2026 Jun 17; Vol. 17 (1). Date of Electronic Publication: 2026 Jun 17.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Structural characterization of the human CC2D1A fragment associated with non-syndromic intellectual disability (NSID).

Authors: Yeh YH Lin MG Sun XH et al.

Source: Bioscience reports [Biosci Rep] 2026 Jun 17; Vol. 46 (6).

Publication Type: Journal Article

Journal Info: Publisher: Portland Press on behalf of the Biochemical Society Country of Publication: England NLM ID: 8102797 Publication Model: Print Cited Medium: Internet ISSN: 1573-4935 (Electronic) Linking ISSN: 01448463 NLM ISO Abbreviation: Biosci Rep Subsets: MEDLINE

Exploring the Mechanism of Umami Peptide Binding with the T1R1/T1R3 Receptor via Molecular Dynamics Simulations.

Authors: Lu C Wu B Xu X et al.

Source: Molecules (Basel, Switzerland) [Molecules] 2026 Jun 16; Vol. 31 (12). Date of Electronic Publication: 2026 Jun 16.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 100964009 Publication Model: Electronic Cited Medium: Internet ISSN: 1420-3049 (Electronic) Linking ISSN: 14203049 NLM ISO Abbreviation: Molecules Subsets: MEDLINE