Search Results - "Adey AC"

Early postnatal DNA methylation dynamics define neuronal subtypes and are disrupted by MECP2 loss.

Authors: Rylaarsdam LE Nichols RV O'Connell BL et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Jun 08. Date of Electronic Publication: 2026 Jun 08.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Cell fusion reprograms tumor cells and promotes RUNX1-mediated invasion and dissemination in colorectal cancer.

Authors: Anderson AN Queitsch K Giske NR et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Apr 15. Date of Electronic Publication: 2026 Apr 15.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

PU.1 inhibition sensitizes stem-monocytic AML to BCL2 blockade.

Authors: Yashar WM Pacentine IV Taherinasab A et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Jan 23. Date of Electronic Publication: 2026 Jan 23.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Mutant ASXL1 Drives Transcriptional Activation and Repression in Human Hematopoiesis.

Authors: Hall ML Quintal A Worme S et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Jan 14. Date of Electronic Publication: 2026 Jan 14.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

The Prolyl Isomerase PIN1 Affects Fibroblast Differentiation States and Cross-talk in Pancreatic Cancer.

Authors: Bowman CL Daniel CJ Carlson EJ et al.

Source: Cancer research [Cancer Res] 2025 Dec 15; Vol. 85 (24), pp. 4899-4917.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Association for Cancer Research Country of Publication: United States NLM ID: 2984705R Publication Model: Print Cited Medium: Internet ISSN: 1538-7445 (Electronic) Linking ISSN: 00085472 NLM ISO Abbreviation: Cancer Res Subsets: MEDLINE

sciMET-cap: high-throughput single-cell methylation analysis with a reduced sequencing burden.

Authors: Acharya SN Nichols RV Rylaarsdam LE et al.

Source: Genome biology [Genome Biol] 2024 Jul 10; Vol. 25 (1), pp. 186. Date of Electronic Publication: 2024 Jul 10.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Single-cell DNA methylation analysis tool Amethyst resolves distinct non-CG methylation patterns in human astrocytes and oligodendrocytes.

Authors: Rylaarsdam LE Skubi BW Nichols RV et al.

Source: Communications biology [Commun Biol] 2025 Oct 14; Vol. 8 (1), pp. 1468. Date of Electronic Publication: 2025 Oct 14.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

Dual states of murine Bmi1-expressing intestinal stem cells drive epithelial development utilizing non-canonical Wnt signaling.

Authors: Smith NR Giske NR Sengupta SK et al.

Source: Developmental cell [Dev Cell] 2025 Aug 18; Vol. 60 (16), pp. 2177-2191.e5. Date of Electronic Publication: 2025 Apr 21.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101120028 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1878-1551 (Electronic) Linking ISSN: 15345807 NLM ISO Abbreviation: Dev Cell Subsets: MEDLINE

txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility.

Authors: Zhang H Mulqueen RM Iannuzo N et al.

Source: Genome biology [Genome Biol] 2024 Mar 22; Vol. 25 (1), pp. 78. Date of Electronic Publication: 2024 Mar 22.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Atlas-scale single-cell DNA methylation profiling with sciMETv3.

Authors: Nichols RV Rylaarsdam LE O'Connell BL et al.

Source: Cell genomics [Cell Genom] 2025 Jan 08; Vol. 5 (1), pp. 100726. Date of Electronic Publication: 2024 Dec 23.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier, Inc Country of Publication: United States NLM ID: 9918284260106676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-979X (Electronic) Linking ISSN: 2666979X NLM ISO Abbreviation: Cell Genom Subsets: MEDLINE

Ongoing replication stress tolerance and clonal T cell responses distinguish liver and lung recurrence and outcomes in pancreatic cancer.

Authors: Link JM Eng JR Pelz C et al.

Source: Nature cancer [Nat Cancer] 2025 Jan; Vol. 6 (1), pp. 123-144. Date of Electronic Publication: 2025 Jan 09.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101761119 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2662-1347 (Electronic) Linking ISSN: 26621347 NLM ISO Abbreviation: Nat Cancer Subsets: MEDLINE

High-throughput robust single-cell DNA methylation profiling with sciMETv2.

Authors: Nichols RV O'Connell BL Mulqueen RM et al.

Source: Nature communications [Nat Commun] 2022 Dec 09; Vol. 13 (1), pp. 7627. Date of Electronic Publication: 2022 Dec 09.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Shared and Distinct Functional Effects of Patient-Specific Tbr1 Mutations on Cortical Development.

Authors: Co M Barnard RA Jahncke JN et al.

Source: The Journal of neuroscience : the official journal of the Society for Neuroscience [J Neurosci] 2022 Sep 14; Vol. 42 (37), pp. 7166-7181. Date of Electronic Publication: 2022 Aug 09.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Society for Neuroscience Country of Publication: United States NLM ID: 8102140 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1529-2401 (Electronic) Linking ISSN: 02706474 NLM ISO Abbreviation: J Neurosci Subsets: MEDLINE

Single-cell DNA methylation analysis tool Amethyst reveals distinct noncanonical methylation patterns in human glial cells.

Authors: Rylaarsdam LE Nichols RV O'Connell BL et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Sep 03. Date of Electronic Publication: 2024 Sep 03.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Multiplex imaging of localized prostate tumors reveals altered spatial organization of AR-positive cells in the microenvironment.

Authors: Ak Ç Sayar Z Thibault G et al.

Source: IScience [iScience] 2024 Aug 03; Vol. 27 (9), pp. 110668. Date of Electronic Publication: 2024 Aug 03 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101724038 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-0042 (Electronic) Linking ISSN: 25890042 NLM ISO Abbreviation: iScience Subsets: PubMed not MEDLINE

Epigenetic loss of heterogeneity from low to high grade localized prostate tumours.

Authors: Eksi SE Chitsazan A Sayar Z et al.

Source: Nature communications [Nat Commun] 2021 Dec 15; Vol. 12 (1), pp. 7292. Date of Electronic Publication: 2021 Dec 15.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Neutralization of SARS-CoV-2 variants by convalescent and BNT162b2 vaccinated serum.

Authors: Bates TA Leier HC Lyski ZL et al.

Source: Nature communications [Nat Commun] 2021 Aug 26; Vol. 12 (1), pp. 5135. Date of Electronic Publication: 2021 Aug 26.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Systematic benchmarking of single-cell ATAC-sequencing protocols.

Authors: De Rop FV Hulselmans G Flerin C et al.

Source: Nature biotechnology [Nat Biotechnol] 2024 Jun; Vol. 42 (6), pp. 916-926. Date of Electronic Publication: 2023 Aug 03.

Publication Type: Journal Article

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

Age-dependent transcriptional alterations in cardiac endothelial cells.

Authors: Emechebe U Nelson JW Alkayed NJ et al.

Source: Physiological genomics [Physiol Genomics] 2021 Jul 01; Vol. 53 (7), pp. 295-308. Date of Electronic Publication: 2021 Jun 07.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Physiological Society Country of Publication: United States NLM ID: 9815683 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1531-2267 (Electronic) Linking ISSN: 10948341 NLM ISO Abbreviation: Physiol Genomics Subsets: MEDLINE

Spatially mapped single-cell chromatin accessibility.

Authors: Thornton CA Mulqueen RM Torkenczy KA et al.

Source: Nature communications [Nat Commun] 2021 Feb 24; Vol. 12 (1), pp. 1274. Date of Electronic Publication: 2021 Feb 24.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE