Search Results - "Backman TWH"

TridentSynth: a webtool for the retrosynthesis of molecules using chimeric type I polyketide synthases and chemoenzymatic pathways.

Authors: Chainani Y Guilarte-Silva M Roberts K et al.

Source: Nucleic acids research [Nucleic Acids Res] 2026 Jul 11; Vol. 54 (W1), pp. W65-W76.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Merging the computational design of chimeric type I polyketide synthases with enzymatic pathways for chemical biosynthesis.

Authors: Chainani Y Diaz J Guilarte-Silva M et al.

Source: Nature communications [Nat Commun] 2025 Jul 01; Vol. 16 (1), pp. 5787. Date of Electronic Publication: 2025 Jul 01.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale.

Authors: Backman TWH Schenk C Radivojevic T et al.

Source: PLoS computational biology [PLoS Comput Biol] 2023 Nov 10; Vol. 19 (11), pp. e1011111. Date of Electronic Publication: 2023 Nov 10 (Print Publication: 2023).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design.

Authors: Tao XB LaFrance S Xing Y et al.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Jan 06; Vol. 51 (D1), pp. D532-D538.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases.

Authors: Barajas JF McAndrew RP Thompson MG et al.

Source: Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2019 Aug; Vol. 46 (8), pp. 1225-1235. Date of Electronic Publication: 2019 May 21.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: Germany NLM ID: 9705544 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-5535 (Electronic) Linking ISSN: 13675435 NLM ISO Abbreviation: J Ind Microbiol Biotechnol Subsets: MEDLINE

Synthetic biology of polyketide synthases.

Authors: Yuzawa S Backman TWH Keasling JD et al.

Source: Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2018 Jul; Vol. 45 (7), pp. 621-633. Date of Electronic Publication: 2018 Feb 09.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: Germany NLM ID: 9705544 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-5535 (Electronic) Linking ISSN: 13675435 NLM ISO Abbreviation: J Ind Microbiol Biotechnol Subsets: MEDLINE

ClusterCAD: a computational platform for type I modular polyketide synthase design.

Authors: Eng CH Backman TWH Bailey CB et al.

Source: Nucleic acids research [Nucleic Acids Res] 2018 Jan 04; Vol. 46 (D1), pp. D509-D515.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res

Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for ¹³C Metabolic Flux Analysis.

Authors: Backman TWH Ando D Singh J et al.

Source: Metabolites [Metabolites] 2018 Jan 04; Vol. 8 (1). Date of Electronic Publication: 2018 Jan 04.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101578790 Publication Model: Electronic Cited Medium: Print ISSN: 2218-1989 (Print) Linking ISSN: 22181989 NLM ISO Abbreviation: Metabolites Subsets: PubMed not MEDLINE

Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.

Authors: Birkel GW Ghosh A Kumar VS et al.

Source: BMC bioinformatics [BMC Bioinformatics] 2017 Apr 18; Vol. 18 (1), pp. 219. Date of Electronic Publication: 2017 Apr 18.

Publication Type: Journal Article; Published Erratum

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: PubMed not MEDLINE

The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.

Authors: Birkel GW Ghosh A Kumar VS et al.

Source: BMC bioinformatics [BMC Bioinformatics] 2017 Apr 05; Vol. 18 (1), pp. 205. Date of Electronic Publication: 2017 Apr 05.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Chemoinformatic-Guided Engineering of Polyketide Synthases.

Authors: Zargar A Lal R Valencia L et al.

Source: Journal of the American Chemical Society [J Am Chem Soc] 2020 Jun 03; Vol. 142 (22), pp. 9896-9901. Date of Electronic Publication: 2020 May 18.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 7503056 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-5126 (Electronic) Linking ISSN: 00027863 NLM ISO Abbreviation: J Am Chem Soc Subsets: MEDLINE

The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization.

Authors: Morrell WC Birkel GW Forrer M et al.

Source: ACS synthetic biology [ACS Synth Biol] 2017 Dec 15; Vol. 6 (12), pp. 2248-2259. Date of Electronic Publication: 2017 Sep 08.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101575075 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2161-5063 (Electronic) Linking ISSN: 21615063 NLM ISO Abbreviation: ACS Synth Biol Subsets: MEDLINE