Search Results - "Bader JS"

Molecular Systems Biology at 20: reflecting on the past, envisioning the future.

Authors: Bheda P Hou J Aebersold R et al.

Source: Molecular systems biology [Mol Syst Biol] 2025 Dec; Vol. 21 (12), pp. 1667-1673. Date of Electronic Publication: 2025 Nov 20.

Publication Type: Editorial

Journal Info: Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE; In Process

Human Immunodeficiency Virus-Associated Proteomic Signature of Myocardial Fibrosis and Incident Heart Failure.

Authors: Peterson TE Hahn VS Moaddel R et al.

Source: The Journal of infectious diseases [J Infect Dis] 2026 Apr 29; Vol. 233 (4), pp. e937-e947.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0413675 Publication Model: Print Cited Medium: Internet ISSN: 1537-6613 (Electronic) Linking ISSN: 00221899 NLM ISO Abbreviation: J Infect Dis Subsets: MEDLINE

Construction and iterative redesign of synXVI a 903 kb synthetic Saccharomyces cerevisiae chromosome.

Authors: Goold HD Kroukamp H Erpf PE et al.

Source: Nature communications [Nat Commun] 2025 Jan 20; Vol. 16 (1), pp. 841. Date of Electronic Publication: 2025 Jan 20.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Proteomic signature of HIV-associated subclinical left atrial remodeling and incident heart failure.

Authors: Peterson TE Hahn VS Moaddel R et al.

Source: Nature communications [Nat Commun] 2025 Jan 12; Vol. 16 (1), pp. 610. Date of Electronic Publication: 2025 Jan 12.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Prioritization of causal genes from genome-wide association studies by Bayesian data integration across loci.

Authors: Mousavi Z Arvanitis M Duong T et al.

Source: PLoS computational biology [PLoS Comput Biol] 2025 Jan 07; Vol. 21 (1), pp. e1012725. Date of Electronic Publication: 2025 Jan 07 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

The de novo design and synthesis of yeast chromosome XIII facilitates investigations on aging.

Authors: Zhou C Wang Y Huang Y et al.

Source: Nature communications [Nat Commun] 2024 Nov 22; Vol. 15 (1), pp. 10139. Date of Electronic Publication: 2024 Nov 22.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

The Phosphate-Specific Transport System Gene pstA1 Contributes to Rifampin Tolerance in Mycobacterium tuberculosis.

Authors: Danchik C Anoushka Chinmayi GV Lee GY et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Nov 25. Date of Electronic Publication: 2025 Nov 25.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

cpiVAE: Robust and Interpretable Cross-Platform Proteomics Imputation.

Authors: Li Y Duong T Rooney MR et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Nov 21. Date of Electronic Publication: 2025 Nov 21.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Transcriptomic dynamics of ABA response in Brassica napus guard cells.

Authors: Villiers F Suhail Y Lee J et al.

Source: Stress biology [Stress Biol] 2024 Oct 14; Vol. 4 (1), pp. 43. Date of Electronic Publication: 2024 Oct 14.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: Switzerland NLM ID: 9918284258406676 Publication Model: Electronic Cited Medium: Internet ISSN: 2731-0450 (Electronic) Linking ISSN: 27310450 NLM ISO Abbreviation: Stress Biol Subsets: PubMed not MEDLINE

Prioritizing drug targets by perturbing biological network response functions.

Authors: Perrone MC Lerner MG Dunworth M et al.

Source: PLoS computational biology [PLoS Comput Biol] 2024 Jun 27; Vol. 20 (6), pp. e1012195. Date of Electronic Publication: 2024 Jun 27 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Deleterious mitochondrial heteroplasmies exhibit increased longitudinal change in variant allele fraction.

Authors: Kuiper LM Shi W Verlouw JAM et al.

Source: IScience [iScience] 2025 May 06; Vol. 28 (6), pp. 112590. Date of Electronic Publication: 2025 May 06 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101724038 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-0042 (Electronic) Linking ISSN: 25890042 NLM ISO Abbreviation: iScience Subsets: PubMed not MEDLINE

P4HA1 Mediates Hypoxia-Induced Invasion in Human Pancreatic Cancer Organoids.

Authors: Navarro-Serer B Wissler MF Glover BK et al.

Source: Cancer research communications [Cancer Res Commun] 2025 May 01; Vol. 5 (5), pp. 881-895.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Association for Cancer Research Country of Publication: United States NLM ID: 9918281580506676 Publication Model: Print Cited Medium: Internet ISSN: 2767-9764 (Electronic) Linking ISSN: 27679764 NLM ISO Abbreviation: Cancer Res Commun Subsets: MEDLINE

Priors, population sizes, and power in genome-wide hypothesis tests.

Authors: Cai J Zhan J Arking DE et al.

Source: BMC bioinformatics [BMC Bioinformatics] 2023 Apr 26; Vol. 24 (1), pp. 170. Date of Electronic Publication: 2023 Apr 26.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Next-generation large-scale binary protein interaction network for Drosophila melanogaster.

Authors: Tang HW Spirohn K Hu Y et al.

Source: Nature communications [Nat Commun] 2023 Apr 15; Vol. 14 (1), pp. 2162. Date of Electronic Publication: 2023 Apr 15.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Circulating Blood Plasma Profiling Reveals Proteomic Signature and a Causal Role for SVEP1 in Sudden Cardiac Death.

Authors: Duong T Austin TR Brody JA et al.

Source: Circulation. Genomic and precision medicine [Circ Genom Precis Med] 2024 Oct; Vol. 17 (5), pp. e004494. Date of Electronic Publication: 2024 Sep 05.

Publication Type: Journal Article; Review

Journal Info: Publisher: Lippincott Williams & Wilkins Country of Publication: United States NLM ID: 101714113 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2574-8300 (Electronic) Linking ISSN: 25748300 NLM ISO Abbreviation: Circ Genom Precis Med Subsets: MEDLINE

Ensemble Detection of DNA Engineering Signatures.

Authors: Adler A Bader JS Basnight B et al.

Source: ACS synthetic biology [ACS Synth Biol] 2024 Apr 19; Vol. 13 (4), pp. 1105-1115. Date of Electronic Publication: 2024 Mar 12.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101575075 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2161-5063 (Electronic) Linking ISSN: 21615063 NLM ISO Abbreviation: ACS Synth Biol Subsets: MEDLINE

Longitudinal change in mitochondrial heteroplasmy exhibits positive selection for deleterious variants.

Authors: Kuiper LM Shi W Verlouw J et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2024 Apr 03. Date of Electronic Publication: 2024 Apr 03.

Publication Type: Preprint

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

Proteomic Signature of HIV-Associated Subclinical Left Atrial Remodeling and Incident Heart Failure.

Authors: Peterson TE Hahn VS Moaddel R et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2024 Feb 14. Date of Electronic Publication: 2024 Feb 14.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

Schizophrenia risk alleles often affect the expression of many genes and each gene may have a different effect on the risk: A mediation analysis.

Authors: Peng X Bader JS Avramopoulos D

Source: American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics [Am J Med Genet B Neuropsychiatr Genet] 2021 Jun; Vol. 186 (4), pp. 251-258. Date of Electronic Publication: 2021 Mar 08.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Wiley-Blackwell Country of Publication: United States NLM ID: 101235742 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1552-485X (Electronic) Linking ISSN: 15524841 NLM ISO Abbreviation: Am J Med Genet B Neuropsychiatr Genet Subsets: MEDLINE

Genetic interaction mapping informs integrative structure determination of protein complexes.

Authors: Braberg H Echeverria I Bohn S et al.

Source: Science (New York, N.Y.) [Science] 2020 Dec 11; Vol. 370 (6522).

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE