Search Results - "Beavan AJS"

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Deep-time gene expression shift reveals an ancient change in avian muscle phenotypes.

Authors: Harvey, Christina M. Fuxjager, Matthew J. Pease, James B.

Source: PLoS Genetics. 4/11/2025, Vol. 21 Issue 4, p1-17. 17p.

Contingency, repeatability, and predictability in the evolution of a prokaryotic pangenome.

Authors: Beavan AJS Domingo-Sananes MR McInerney JO

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Jan 02; Vol. 121 (1), pp. e2304934120. Date of Electronic Publication: 2023 Dec 26.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

Non-coding DNA dynamics and its roles as a physical barrier in genome safeguarding across early development and evolution.

Authors: Qiu GH Zheng X Fu M et al.

Source: Heredity [Heredity (Edinb)] 2026 Jul 04. Date of Electronic Publication: 2026 Jul 04.

Publication Type: Journal Article; Review

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0373007 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-2540 (Electronic) Linking ISSN: 0018067X NLM ISO Abbreviation: Heredity (Edinb) Subsets: MEDLINE

Domain acquisition enabled functional expansion of the TFIIS transcription factor family.

Authors: Matveyeva, Kateryna de Diego, Ainhoa Sánchez García-López, María Ángeles et al.

Source: Cell & Bioscience. 6/4/2025, Vol. 15 Issue 1, p1-17. 17p.

Tracing the vertebrate selenoproteome evolution reveals expansions in ray-finned fishes and convergent depletions in tetrapods.

Authors: Ticó M Lozano-Fernandez J Mariotti M

Source: BMC genomics [BMC Genomics] 2026 Mar 24; Vol. 27 (1). Date of Electronic Publication: 2026 Mar 24.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Precise paternal ancestry of hybrid unisexual ZW lizards (genus Darevskia: Lacertidae: Squamata) revealed by Z-linked genomic markers.

Authors: Yanchukov, Alexey Tarkhnishvili, David Erdolu, Meriç et al.

Source: Biological Journal of the Linnean Society. Jun2022, Vol. 136 Issue 2, p293-305. 13p.

Genome-wide co-occurrence patterns link mobile genetic elements, antimicrobial resistance and defense systems in Pseudomonas aeruginosa.

Authors: Choudhury ST Andam CP

Source: BMC genomics [BMC Genomics] 2026 Jan 29; Vol. 27 (1), pp. 226. Date of Electronic Publication: 2026 Jan 29.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Genomic reconsideration of fish non-monophyly: why cannot we simply call them all 'fish'?

Authors: Kuraku, Shigehiro Sato, Mana Yoshida, Kohta et al.

Source: Ichthyological Research. Jan2024, Vol. 71 Issue 1, p1-12. 12p.

PanForest: predicting genes in genomes using random forests.

Authors: Beavan AJS Domingo-Sananes MR McInerney JO

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Jan 02; Vol. 42 (1).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Genetic variants in Rps4x cause intellectual disability with dysmorphic features, microcephaly, and autism.

Authors: Matheny-Rabun C Holloway L Corning K et al.

Source: NPJ genomic medicine [NPJ Genom Med] 2026 Apr 24; Vol. 11 (1). Date of Electronic Publication: 2026 Apr 24.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature in partnership with the Center of Excellence in Genomic Medicine Research at King Abdulaziz University Country of Publication: England NLM ID: 101685193 Publication Model: Electronic Cited Medium: Internet ISSN: 2056-7944 (Electronic) Linking ISSN: 20567944 NLM ISO Abbreviation: NPJ Genom Med Subsets: PubMed not MEDLINE

CORGIAS: identifying correlated gene pairs by considering evolutionary history in a large-scale prokaryotic genome dataset.

Authors: Nishimura Y Omae K Tominaga K et al.

Source: NAR genomics and bioinformatics [NAR Genom Bioinform] 2025 Dec 12; Vol. 7 (4), pp. lqaf182. Date of Electronic Publication: 2025 Dec 12 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: MEDLINE

Machine learning and statistical inference in microbial population genomics.

Authors: Sheppard SK Arning N Eyre DW et al.

Source: Genome biology [Genome Biol] 2025 Sep 27; Vol. 26 (1), pp. 313. Date of Electronic Publication: 2025 Sep 27.

Publication Type: Journal Article; Review

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Evolutionary diversification of ancestral genes across vertebrates and insects.

Authors: Mantica F Irimia M

Source: Genome biology [Genome Biol] 2025 Sep 04; Vol. 26 (1), pp. 268. Date of Electronic Publication: 2025 Sep 04.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Divergence of Leptin Receptor and Interleukin-6 Receptor Subunit b in Early Vertebrate Evolution and Physiological Insights from the Sea Lamprey.

Authors: Gong N Barany A Norstog JL et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2025 Jul 01; Vol. 42 (7).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

Whole Genome Duplication in the Genomics Era: The Hidden Gems in Invertebrates?

Authors: Au HM Nong W Hui JHL

Source: Genome biology and evolution [Genome Biol Evol] 2025 Apr 30; Vol. 17 (5).

Publication Type: Journal Article; Review; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101509707 Publication Model: Print Cited Medium: Internet ISSN: 1759-6653 (Electronic) Linking ISSN: 17596653 NLM ISO Abbreviation: Genome Biol Evol Subsets: MEDLINE

An Extensive Survey of Vertebrate-specific, Nonvisual Opsins Identifies a Novel Subfamily, Q113-Bistable Opsin.

Authors: Gyoja F Sato K Yamashita T et al.

Source: Genome biology and evolution [Genome Biol Evol] 2025 Mar 06; Vol. 17 (3).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101509707 Publication Model: Print Cited Medium: Internet ISSN: 1759-6653 (Electronic) Linking ISSN: 17596653 NLM ISO Abbreviation: Genome Biol Evol Subsets: MEDLINE

Convergent Evolution of Cysteine-Rich Keratins in Horny Teeth of Jawless Vertebrates and in Cornified Skin Appendages of Amniotes.

Authors: Sachslehner AP Eckhart L

Source: Molecular biology and evolution [Mol Biol Evol] 2025 Feb 03; Vol. 42 (2).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

Every Gain Comes With Loss: Ecological and Physiological Shifts Associated With Polyploidization in a Pygmy Frog.

Authors: Chen Q Zhu W Chang L et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2025 Feb 03; Vol. 42 (2).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

Coding Genes Helped the Origination and Diversification of Intragenic MicroRNAs.

Authors: Liu C Zhang X Yuan J et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2025 Feb 03; Vol. 42 (2).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE