Search Results - "Bioinformatics software"

Uncertainty-aware quantitative analysis of high-throughput live cell migration data.

Authors: Kitanovski, Simo Conroy, Shannon Sonneck, Justin et al.

Source: PLoS Computational Biology. 7/13/2026, Vol. 22 Issue 7, p1-31. 31p.

Wekemo Bioincloud 2026: An AI‐enabled platform for standardized multi‐omics data analyses.

Authors: Gao, Yunyun Zhang, Guoxing Wang, Chengrui et al.

Source: iMeta. Jul2026, p1. 12p. 5 Illustrations.

Bioinformatics Tools, Databases, and Data Formats: A Functional Overview for Introductory Sequence-Based and NGS Workflows.

Authors: Domingues, Inês Santos, João A. M.

Source: Applied Sciences (2076-3417); Jul2026, Vol. 16 Issue 13, p6666, 24p

GrassSV – hybrid method to detect structural variants in high throughput DNA-seq data.

Authors: Witczak, Dominik Sychla, Krzysztof Wysocka, Julia et al.

Source: PLoS Computational Biology. 6/22/2026, Vol. 22 Issue 6, p1-14. 14p.

delimtools : an R package for species delimitation.

Authors: Bittencourt, Pedro S. Collins, Rupert A. Hrbek, Tomas

Source: Genome. 6/16/2026, Vol. 69, p1-10. 10p.

Rapid construction of insect–plant interaction networks via multiplexed long‐fragment DNA metabarcoding and NGS.

Authors: Zhang, Xiao‐man Zheng, Yu‐xuan Zhang, Shao‐jun et al.

Source: Methods in Ecology & Evolution. Jun2026, Vol. 17 Issue 6, p1896-1909. 14p.

PMconv: How to Compare Proteomes and Metabolomes?

Authors: Kozlova, Anna Kliuchnikova, Anna Gordeeva, Arina et al.

Source: International Journal of Molecular Sciences. Jun2026, Vol. 27 Issue 11, p5086. 17p.

AgrOmicSo: A client-server interface for accessible large-scale analysis of next-generation sequencing data.

Authors: Lee, Dong-Jun Lee, Tae-Ho Kwon, Taesoo

Source: PLoS ONE. 6/1/2026, Vol. 21 Issue 6, p1-14. 14p.

DupyliCate: mining, classifying, and characterizing gene duplications.

Authors: Natarajan, Shakunthala Pucker, Boas

Source: Scientific Reports. 5/28/2026, Vol. 16 Issue 1, p1-20. 20p.

RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data.

Authors: Liu, Yunjie Liu, Yijia Zhang, Zhouming et al.

Source: PLoS ONE. 5/22/2026, Vol. 21 Issue 5, p1-18. 18p.

RhoMitoAnnotator and Polypods, Bioinformatics Tools for the Rhodiola Mitochondrial Gene Assembly, Annotation and Phylogenetic Analysis.

Authors: Zang, Erhuan Zhu, Yanda Ma, Tingyu et al.

Source: International Journal of Molecular Sciences. May2026, Vol. 27 Issue 10, p4440. 26p.

Fifteen Years of the Genome Analysis Toolkit as the De Facto Standard in Short-Read Variant Calling.

Authors: Blazyte, Asta Le, Long Lee, Jaesuk et al.

Source: International Journal of Molecular Sciences. May2026, Vol. 27 Issue 9, p3754. 28p.

面向亲和富集-质谱分析通用需求的生物信息学分析平台.

Alternate Title: A Bioinformatics Platform for General Affinity Purification-Mass Spectrometry Analysis.

Authors: 张骞宁 何岸 李元 et al.

Source: Journal of Chinese Mass Spectrometry Society. May2026, Vol. 47 Issue 3, p456-463. 8p.

ComTarget: Small-Molecule Target Prediction with Combinatorial Modeling.

Authors: Li, Yuzhu Shi, Qingyi Lu, Xingjie et al.

Source: Pharmaceuticals (14248247). May2026, Vol. 19 Issue 5, p715. 27p.

STARCall integrates image stitching, alignment, and read calling to enable scalable analysis of in situ sequencing data.

Authors: Bradley, Nicholas J. Pendyala, Sriram Partington, Katie et al.

Source: PLoS Computational Biology. 4/27/2026, Vol. 22 Issue 4, p1-20. 20p.

Ten common mistakes that could ruin your enrichment analysis.

Authors: Bora, Anusuiya McKenzie, Matthew Ziemann, Mark

Source: PLoS Computational Biology. 4/22/2026, Vol. 22 Issue 4, p1-10. 10p.

FAVABEAN and FALAPhyl: Open-source pipelines for scalable 16s rRNA microbiome data processing and visualization.

Authors: Faridoun, Afnan Carvalho, Ramon Smith, Jacob et al.

Source: PLoS ONE. 4/7/2026, Vol. 21 Issue 4, p1-16. 16p.

ntStat: k-mer characterization using occurrence statistics in raw sequencing data.

Authors: Kazemi, Parham Coombe, Lauren Warren, René L. et al.

Source: PLoS Computational Biology. 4/1/2026, Vol. 22 Issue 4, p1-15. 15p.

PAQman: reference-free ensemble evaluation of long-read genome assemblies.

Authors: O'Donnell, Samuel Li, Ningxiao Steenwyk, Jacob L et al.

Source: G3: Genes | Genomes | Genetics. Apr2026, Vol. 16 Issue 4, p1-6. 6p.

TSSpredator-Web: A web-application for transcription start site prediction and exploration.

Authors: Witte Paz, Mathias Herbig, Alexander Nieselt, Kay

Source: PLoS ONE. 3/13/2026, Vol. 21 Issue 3, p1-19. 19p.