Search Results - "Boemo MA"

Replication origin firing capacity indicates ATR inhibitor sensitivity.

Authors: Lumeau A Pfuderer PL Scarth JA et al.

Source: Nature communications [Nat Commun] 2026 Jun 19. Date of Electronic Publication: 2026 Jun 19.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

A high-resolution, nanopore-based artificial intelligence assay for DNA replication stress in human cancer cells.

Authors: Jones MJK Rai SK Pfuderer PL et al.

Source: Nature communications [Nat Commun] 2025 Aug 19; Vol. 16 (1), pp. 7732. Date of Electronic Publication: 2025 Aug 19.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

ecDNA replication is disorganized and vulnerable to replication stress.

Authors: Jaworski JJ Pfuderer PL Czyz P et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Jul 19; Vol. 53 (14).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Regulation of replication timing in Saccharomyces cerevisiae.

Authors: Berners-Lee R Gilmore E Berkemeier F et al.

Source: PLoS computational biology [PLoS Comput Biol] 2025 Jun 02; Vol. 21 (6), pp. e1013066. Date of Electronic Publication: 2025 Jun 02 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

DNA replication timing reveals genome-wide features of transcription and fragility.

Authors: Berkemeier F Cook PR Boemo MA

Source: Nature communications [Nat Commun] 2025 May 19; Vol. 16 (1), pp. 4658. Date of Electronic Publication: 2025 May 19.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

CAD-C reveals centromere pairing and near-perfect alignment of sister chromatids.

Authors: Delamarre A Reveil M Pichon DP et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Mar 06. Date of Electronic Publication: 2026 Mar 06.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

DNA replication dynamics are associated with genome composition in Plasmodium species.

Authors: Totañes FIG Chapman SE Rai SK et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Feb 08; Vol. 53 (4).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

A genome-wide map of DNA replication at single-molecule resolution in the malaria parasite Plasmodium falciparum.

Authors: Totañes FIG Gockel J Chapman SE et al.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Apr 11; Vol. 51 (6), pp. 2709-2724.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Replication stress generates distinctive landscapes of DNA copy number alterations and chromosome scale losses.

Authors: Shaikh N Mazzagatti A De Angelis S et al.

Source: Genome biology [Genome Biol] 2022 Oct 20; Vol. 23 (1), pp. 223. Date of Electronic Publication: 2022 Oct 20.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

DNAscent v2: detecting replication forks in nanopore sequencing data with deep learning.

Authors: Boemo MA; Department of Pathology, University of Cambridge, Cambridge, UK. mb915@cam.ac.uk.

Source: BMC genomics [BMC Genomics] 2021 Jun 09; Vol. 22 (1), pp. 430. Date of Electronic Publication: 2021 Jun 09.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

The Beacon Calculus: A formal method for the flexible and concise modelling of biological systems.

Authors: Boemo MA Cardelli L Nieduszynski CA

Source: PLoS computational biology [PLoS Comput Biol] 2020 Mar 09; Vol. 16 (3), pp. e1007651. Date of Electronic Publication: 2020 Mar 09 (Print Publication: 2020).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

An Autonomous Oscillation Times and Executes Centriole Biogenesis.

Authors: Aydogan MG Steinacker TL Mofatteh M et al.

Source: Cell [Cell] 2020 Jun 25; Vol. 181 (7), pp. 1566-1581.e27. Date of Electronic Publication: 2020 Jun 11.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads.

Authors: Müller CA Boemo MA Spingardi P et al.

Source: Nature methods [Nat Methods] 2019 May; Vol. 16 (5), pp. 429-436. Date of Electronic Publication: 2019 Apr 22.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

Mathematical modelling of a hypoxia-regulated oncolytic virus delivered by tumour-associated macrophages.

Authors: Boemo MA Byrne HM

Source: Journal of theoretical biology [J Theor Biol] 2019 Jan 14; Vol. 461, pp. 102-116. Date of Electronic Publication: 2018 Oct 23.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Country of Publication: England NLM ID: 0376342 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-8541 (Electronic) Linking ISSN: 00225193 NLM ISO Abbreviation: J Theor Biol Subsets: MEDLINE

The Formal Language and Design Principles of Autonomous DNA Walker Circuits.

Authors: Boemo MA Lucas AE Turberfield AJ et al.

Source: ACS synthetic biology [ACS Synth Biol] 2016 Aug 19; Vol. 5 (8), pp. 878-84. Date of Electronic Publication: 2016 May 11.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101575075 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2161-5063 (Electronic) Linking ISSN: 21615063 NLM ISO Abbreviation: ACS Synth Biol Subsets: MEDLINE