Search Results - "Bolnick DI"

Hypergraph representations of single-cell RNA sequencing data for improved cell clustering.

Authors: He W Bolnick DI Scarpino SV et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Apr 07; Vol. 42 (4).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Changes in gene regulation are associated with the evolution of resistance to a novel parasite.

Authors: Fuess LE Hund AK Kenney ML et al.

Source: Frontiers in immunology [Front Immunol] 2026 Feb 26; Vol. 17, pp. 1697157. Date of Electronic Publication: 2026 Feb 26 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE

Macroevolutionary changes in gene expression response to an immune stimulus across the diversity of fishes.

Authors: Flanagan BA Fuess LE Vrtílek M et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2026 Jan 03; Vol. 43 (1).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

Constitutive and inducible fibrosis explain immune variation among threespine stickleback populations.

Authors: Choi E Flanagan BA Alexander H et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Jul 23. Date of Electronic Publication: 2026 Jul 23.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Effects of hybridization and gene flow on gene co-expression networks.

Authors: Runghen R Bolnick DI

Source: Genetics [Genetics] 2025 Jun 04; Vol. 230 (2).

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0374636 Publication Model: Print Cited Medium: Internet ISSN: 1943-2631 (Electronic) Linking ISSN: 00166731 NLM ISO Abbreviation: Genetics Subsets: MEDLINE

Temperature Modulates PFAS Accumulation and Effects on Metabolic Performance in Sheepshead Minnows.

Authors: Grimmelpont M Rodgers ML Levin M et al.

Source: Environmental science & technology [Environ Sci Technol] 2026 Mar 10; Vol. 60 (9), pp. 6995-7010. Date of Electronic Publication: 2026 Feb 25.

Publication Type: Journal Article

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 0213155 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-5851 (Electronic) Linking ISSN: 0013936X NLM ISO Abbreviation: Environ Sci Technol Subsets: MEDLINE

Among-population proteomic differences in Schistocephalus solidus based on excretory/secretory and total body protein predictions.

Authors: Wang A Bolnick DI

Source: Parasites & vectors [Parasit Vectors] 2025 May 20; Vol. 18 (1), pp. 180. Date of Electronic Publication: 2025 May 20.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101462774 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-3305 (Electronic) Linking ISSN: 17563305 NLM ISO Abbreviation: Parasit Vectors Subsets: MEDLINE

A spectral framework to map QTLs affecting joint differential networks of gene co-expression.

Authors: Hu J Weber JN Fuess LE et al.

Source: PLoS computational biology [PLoS Comput Biol] 2025 Apr 17; Vol. 21 (4), pp. e1012953. Date of Electronic Publication: 2025 Apr 17 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Testing vivo-morpholino mediated gene knockdown in threespine stickleback.

Authors: DiPippo SM Roth-Monzón A Bolnick DI et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Feb 24. Date of Electronic Publication: 2026 Feb 24.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Conservation should assume realistic adaptive capacities.

Authors: Urban MC Elphick CS Bolnick DI

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2026 Jan 27; Vol. 123 (4), pp. e2415291123. Date of Electronic Publication: 2026 Jan 20.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

Hi-reComb: constructing recombination maps from bulk gamete Hi-C sequencing.

Authors: Malinsky M Talbi M Zhou C et al.

Source: Genetics [Genetics] 2026 Jan 07; Vol. 232 (1).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0374636 Publication Model: Print Cited Medium: Internet ISSN: 1943-2631 (Electronic) Linking ISSN: 00166731 NLM ISO Abbreviation: Genetics Subsets: MEDLINE

Lake size shapes the relationship between body mass and gut microbiota in threespine stickleback ( Gasterosteus aculeatus ).

Authors: Bu S Chaudhary S Kramer-Earley R et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Dec 01. Date of Electronic Publication: 2025 Dec 01.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

The Dominance of Coinfecting Parasites' Indirect Genetic Effects on Host Traits.

Authors: Bolnick DI Arruda S Polania C et al.

Source: The American naturalist [Am Nat] 2024 Nov; Vol. 204 (5), pp. 482-500. Date of Electronic Publication: 2024 Sep 09.

Publication Type: Journal Article

Journal Info: Publisher: University of Chicago Press Country of Publication: United States NLM ID: 2984688R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1537-5323 (Electronic) Linking ISSN: 00030147 NLM ISO Abbreviation: Am Nat Subsets: MEDLINE

Predictable and Divergent Change in the Multivariate P Matrix during Parallel Adaptation.

Authors: De Lisle SP Bolnick DI Stuart YE

Source: The American naturalist [Am Nat] 2024 Jul; Vol. 204 (1), pp. 15-29. Date of Electronic Publication: 2024 May 17.

Publication Type: Journal Article

Journal Info: Publisher: University of Chicago Press Country of Publication: United States NLM ID: 2984688R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1537-5323 (Electronic) Linking ISSN: 00030147 NLM ISO Abbreviation: Am Nat Subsets: MEDLINE

Needle in a Haystack: A Droplet Digital Polymerase Chain Reaction Assay to Detect Rare Helminth Parasites Infecting Natural Host Populations.

Authors: Fouilloux CA Neeno-Eckwall E Srinivas I et al.

Source: Molecular ecology resources [Mol Ecol Resour] 2025 Oct; Vol. 25 (7), pp. e14131. Date of Electronic Publication: 2025 Jun 11.

Publication Type: Journal Article; Evaluation Study

Journal Info: Publisher: Blackwell Country of Publication: England NLM ID: 101465604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1755-0998 (Electronic) Linking ISSN: 1755098X NLM ISO Abbreviation: Mol Ecol Resour Subsets: MEDLINE

Opening a can of worms: a test of the co-infection facilitation hypothesis.

Authors: Rodgers ML Bolnick DI

Source: Oecologia [Oecologia] 2024 Feb; Vol. 204 (2), pp. 317-325. Date of Electronic Publication: 2023 Jun 30.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 0150372 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-1939 (Electronic) Linking ISSN: 00298549 NLM ISO Abbreviation: Oecologia Subsets: MEDLINE

Elemental content of a host-parasite relationship in the threespine stickleback.

Authors: Grunberg RL Braat M Bolnick DI

Source: Oecologia [Oecologia] 2024 Feb; Vol. 204 (2), pp. 427-437. Date of Electronic Publication: 2023 Jun 26.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 0150372 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-1939 (Electronic) Linking ISSN: 00298549 NLM ISO Abbreviation: Oecologia Subsets: MEDLINE

Rapid genome-wide introgression reveals fitness advantage of immigrant genotypes.

Authors: Flanagan BA Padhiar A Peng F et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Aug 28. Date of Electronic Publication: 2025 Aug 28.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Dynamics of infection and immunity over 50 years as marine stickleback adapt to freshwater.

Authors: Sriramulu P Schluter D Bolnick DI

Source: Evolution letters [Evol Lett] 2025 Jul 08; Vol. 9 (4), pp. 383-391. Date of Electronic Publication: 2025 Jul 08 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101715791 Publication Model: eCollection Cited Medium: Internet ISSN: 2056-3744 (Electronic) Linking ISSN: 20563744 NLM ISO Abbreviation: Evol Lett Subsets: PubMed not MEDLINE

Hi-reComb: constructing recombination maps from bulk gamete Hi-C sequencing.

Authors: Malinsky M Talbi M Zhou C et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Jul 02. Date of Electronic Publication: 2025 Jul 02.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE