Search Results - "Burdukiewicz M"

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HaDeX2: multi-dimensional analysis of hydrogen-deuterium exchange mass spectrometry data.

Authors: Puchała W Grzesiak K Rafacz D et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Feb 28; Vol. 42 (3).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Databases of liquid-liquid phase separation proteins and condensates.

Authors: Pintado-Grima C Burdukiewicz M Ventura S

Source: Current opinion in structural biology [Curr Opin Struct Biol] 2026 Jul 21; Vol. 100, pp. 103341. Date of Electronic Publication: 2026 Jul 21.

Publication Type: Journal Article; Review

Journal Info: Publisher: Elsevier Science Country of Publication: England NLM ID: 9107784 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-033X (Electronic) Linking ISSN: 0959440X NLM ISO Abbreviation: Curr Opin Struct Biol Subsets: MEDLINE

Comprehensive protein datasets and benchmarking for liquid-liquid phase separation studies.

Authors: Pintado-Grima C Bárcenas O Arribas-Ruiz E et al.

Source: Genome biology [Genome Biol] 2025 Jul 08; Vol. 26 (1), pp. 198. Date of Electronic Publication: 2025 Jul 08.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Experimental methods for studying amyloid cross-interactions.

Authors: Kalitnik A Lassota A Polańska O et al.

Source: Protein science : a publication of the Protein Society [Protein Sci] 2025 Jun; Vol. 34 (6), pp. e70151.

Publication Type: Journal Article; Review

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

Copper is an intestinal habitat filter affecting the gut microbiota interactions with Salmonella Typhimurium.

Authors: Kolenda R Hassan MM Arrieta-Gisasola A et al.

Source: Microbiome [Microbiome] 2026 Mar 28; Vol. 14 (1). Date of Electronic Publication: 2026 Mar 28.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101615147 Publication Model: Electronic Cited Medium: Internet ISSN: 2049-2618 (Electronic) Linking ISSN: 20492618 NLM ISO Abbreviation: Microbiome Subsets: MEDLINE

Structural information in therapeutic peptides: Emerging applications in biomedicine.

Authors: Iglesias V Bárcenas O Pintado-Grima C et al.

Source: FEBS open bio [FEBS Open Bio] 2025 Feb; Vol. 15 (2), pp. 254-268. Date of Electronic Publication: 2024 Jun 14.

Publication Type: Journal Article; Review

Journal Info: Publisher: John Wiley & Sons Ltd Country of Publication: England NLM ID: 101580716 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-5463 (Electronic) Linking ISSN: 22115463 NLM ISO Abbreviation: FEBS Open Bio Subsets: MEDLINE

Comparative analysis of anticoagulant influence on PMI estimation based on porcine blood metabolomics profile measured using GC-MS.

Authors: Mojsak P Samczuk P Klimaszewska P et al.

Source: Frontiers in molecular biosciences [Front Mol Biosci] 2025 Jan 07; Vol. 11, pp. 1400622. Date of Electronic Publication: 2025 Jan 07 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Media S.A Country of Publication: Switzerland NLM ID: 101653173 Publication Model: eCollection Cited Medium: Print ISSN: 2296-889X (Print) Linking ISSN: 2296889X NLM ISO Abbreviation: Front Mol Biosci Subsets: PubMed not MEDLINE

Aggrescan4D: structure-informed analysis of pH-dependent protein aggregation.

Authors: Bárcenas O Kuriata A Zalewski M et al.

Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W170-W175.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

adhesiomeR: a tool for Escherichia coli adhesin classification and analysis.

Authors: Sidorczuk K Burdukiewicz M Cerk K et al.

Source: BMC genomics [BMC Genomics] 2024 Jun 17; Vol. 25 (1), pp. 609. Date of Electronic Publication: 2024 Jun 17.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

imputomics: web server and R package for missing values imputation in metabolomics data.

Authors: Chilimoniuk J Grzesiak K Kała J et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Mar 04; Vol. 40 (3).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organisms.

Authors: Badaczewska-Dawid AE Kuriata A Pintado-Grima C et al.

Source: Nucleic acids research [Nucleic Acids Res] 2024 Jan 05; Vol. 52 (D1), pp. D360-D367.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

HRaDeX: R Package and Web Server for Computing High-Resolution Deuterium Uptake Rates for HDX-MS Data.

Authors: Puchała W Kistowski M Zhukova L et al.

Source: Journal of proteome research [J Proteome Res] 2025 Apr 04; Vol. 24 (4), pp. 1688-1700. Date of Electronic Publication: 2025 Mar 19.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-3907 (Electronic) Linking ISSN: 15353893 NLM ISO Abbreviation: J Proteome Res Subsets: MEDLINE

AmyloGraph: a comprehensive database of amyloid-amyloid interactions.

Authors: Burdukiewicz M Rafacz D Barbach A et al.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Jan 06; Vol. 51 (D1), pp. D352-D357.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data.

Authors: Sidorczuk K Gagat P Pietluch F et al.

Source: Briefings in bioinformatics [Brief Bioinform] 2022 Sep 20; Vol. 23 (5).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

Aggregating amyloid resources: A comprehensive review of databases on amyloid-like aggregation.

Authors: Iglesias V Chilimoniuk J Pintado-Grima C et al.

Source: Computational and structural biotechnology journal [Comput Struct Biotechnol J] 2024 Oct 29; Vol. 23, pp. 4011-4018. Date of Electronic Publication: 2024 Oct 29 (Print Publication: 2024).

Publication Type: Journal Article; Review

Journal Info: Publisher: Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology Country of Publication: Netherlands NLM ID: 101585369 Publication Model: eCollection Cited Medium: Print ISSN: 2001-0370 (Print) Linking ISSN: 20010370 NLM ISO Abbreviation: Comput Struct Biotechnol J Subsets: PubMed not MEDLINE

Identification of amyloidogenic proteins in the microbiomes of a rat Parkinson's disease model and wild-type rats.

Authors: Christensen LFB Alijanvand SH Burdukiewicz M et al.

Source: Protein science : a publication of the Protein Society [Protein Sci] 2021 Sep; Vol. 30 (9), pp. 1854-1870. Date of Electronic Publication: 2021 Jun 09.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

Structural effects of charge destabilization and amino acid substitutions in amyloid fragments of CsgA.

Authors: Szulc N Gąsior-Głogowska M Żyłka P et al.

Source: Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy [Spectrochim Acta A Mol Biomol Spectrosc] 2024 May 15; Vol. 313, pp. 124094. Date of Electronic Publication: 2024 Mar 06.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: England NLM ID: 9602533 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-3557 (Electronic) Linking ISSN: 13861425 NLM ISO Abbreviation: Spectrochim Acta A Mol Biomol Spectrosc Subsets: MEDLINE