Search Results - "Burge CB"

Hepatitis C virus infection and hepatic stellate cell activation downregulate miR-29: miR-29 overexpression reduces hepatitis C viral abundance in culture.

Authors: Bandyopadhyay S Friedman RC Marquez RT et al.

Source: Journal of Infectious Diseases. 6/15/2011, Vol. 203 Issue 12, p1753-1762. 10p.

Sequence-dependent and -independent effects of intron-mediated enhancement learned from thousands of random introns.

Authors: Kowal EJK Sakai Y McGurk MP et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Feb 08; Vol. 53 (4).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Widespread naturally variable human exons aid genetic interpretation.

Authors: Jacobs HN Gorissen BL Guez J et al.

Source: Nature communications [Nat Commun] 2025 Dec 16; Vol. 16 (1), pp. 11345. Date of Electronic Publication: 2025 Dec 16.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

KATMAP infers splicing factor activity and regulatory targets from knockdown data.

Authors: McGurk MP McWatters DC Burge CB

Source: Nature biotechnology [Nat Biotechnol] 2025 Nov 04. Date of Electronic Publication: 2025 Nov 04.

Publication Type: Journal Article

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

A splice-switching antisense oligonucleotide approach for pediatric genetic epilepsies.

Authors: Dame HB Kopalle H Miñana B et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Oct 22. Date of Electronic Publication: 2025 Oct 22.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Improved modeling of RNA-binding protein motifs in an interpretable neural model of RNA splicing.

Authors: Gupta K Yang C McCue K et al.

Source: Genome biology [Genome Biol] 2024 Jan 16; Vol. 25 (1), pp. 23. Date of Electronic Publication: 2024 Jan 16.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Quantifying negative selection in human 3' UTRs uncovers constrained targets of RNA-binding proteins.

Authors: Findlay SD Romo L Burge CB

Source: Nature communications [Nat Commun] 2024 Jan 02; Vol. 15 (1), pp. 85. Date of Electronic Publication: 2024 Jan 02.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Systematic identification of disease-causing promoter and untranslated region variants in 8040 undiagnosed individuals with rare disease.

Authors: Martin-Geary AC Blakes AJM Dawes R et al.

Source: Genome medicine [Genome Med] 2025 Apr 14; Vol. 17 (1), pp. 40. Date of Electronic Publication: 2025 Apr 14.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-994X (Electronic) Linking ISSN: 1756994X NLM ISO Abbreviation: Genome Med Subsets: MEDLINE

LUC7 proteins define two major classes of 5' splice sites in animals and plants.

Authors: Kenny CJ McGurk MP Schüler S et al.

Source: Nature communications [Nat Commun] 2025 Feb 20; Vol. 16 (1), pp. 1574. Date of Electronic Publication: 2025 Feb 20.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.

Authors: Benoit Bouvrette LP Wang X Boulais J et al.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Jan 06; Vol. 51 (D1), pp. D1549-D1557.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Sensory nerves enhance triple-negative breast cancer invasion and metastasis via the axon guidance molecule PlexinB3.

Authors: Le TT Payne SL Buckwald MN et al.

Source: NPJ breast cancer [NPJ Breast Cancer] 2022 Nov 04; Vol. 8 (1), pp. 116. Date of Electronic Publication: 2022 Nov 04.

Publication Type: Journal Article

Journal Info: Publisher: Breast Cancer Research Foundation Country of Publication: United States NLM ID: 101674891 Publication Model: Electronic Cited Medium: Print ISSN: 2374-4677 (Print) Linking ISSN: 23744677 NLM ISO Abbreviation: NPJ Breast Cancer Subsets: PubMed not MEDLINE

Understanding species-specific and conserved RNA-protein interactions in vivo and in vitro.

Authors: Harris SE Alexis MS Giri G et al.

Source: Nature communications [Nat Commun] 2024 Sep 27; Vol. 15 (1), pp. 8400. Date of Electronic Publication: 2024 Sep 27.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Molecular and cellular context influences SCN8A variant function.

Authors: Vanoye CG Abramova TV DeKeyser JM et al.

Source: JCI insight [JCI Insight] 2024 May 21; Vol. 9 (12). Date of Electronic Publication: 2024 May 21.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Society for Clinical Investigation Country of Publication: United States NLM ID: 101676073 Publication Model: Electronic Cited Medium: Internet ISSN: 2379-3708 (Electronic) Linking ISSN: 23793708 NLM ISO Abbreviation: JCI Insight Subsets: MEDLINE

An interpretable model of pre-mRNA splicing for animal and plant genes.

Authors: McCue K Burge CB

Source: Science advances [Sci Adv] 2024 May 10; Vol. 10 (19), pp. eadn1547. Date of Electronic Publication: 2024 May 08.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 101653440 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2375-2548 (Electronic) Linking ISSN: 23752548 NLM ISO Abbreviation: Sci Adv Subsets: MEDLINE

Regulatory features aid interpretation of 3'UTR variants.

Authors: Romo L Findlay SD Burge CB

Source: American journal of human genetics [Am J Hum Genet] 2024 Feb 01; Vol. 111 (2), pp. 350-363. Date of Electronic Publication: 2024 Jan 17.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0370475 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1537-6605 (Electronic) Linking ISSN: 00029297 NLM ISO Abbreviation: Am J Hum Genet Subsets: MEDLINE

Molecular and Cellular Context Influences SCN8A Variant Function.

Authors: Vanoye CG Abramova TV DeKeyser JM et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Nov 13. Date of Electronic Publication: 2023 Nov 13.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Splicing quality control mediated by DHX15 and its G-patch activator SUGP1.

Authors: Feng Q Krick K Chu J et al.

Source: Cell reports [Cell Rep] 2023 Oct 31; Vol. 42 (10), pp. 113223. Date of Electronic Publication: 2023 Oct 08.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

Systematic identification of disease-causing promoter and untranslated region variants in 8,040 undiagnosed individuals with rare disease.

Authors: Martin-Geary AC Blakes AJM Dawes R et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2023 Sep 12. Date of Electronic Publication: 2023 Sep 12.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

Regulatory features aid interpretation of 3'UTR Variants.

Authors: Romo L Findlay SD Burge CB

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Aug 02. Date of Electronic Publication: 2023 Aug 02.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA.

Authors: Yang EW Bahn JH Hsiao EY et al.

Source: Nature communications [Nat Commun] 2019 Mar 22; Vol. 10 (1), pp. 1338. Date of Electronic Publication: 2019 Mar 22.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE