Search Results - "Burge CB"

Analyzing the performance of deep learning splice prediction algorithms.

Authors: Fortier, Nathan Rudy, Gabe Scherer, Andreas

Source: PLoS ONE. 5/13/2026, Vol. 21 Issue 5, p1-16. 16p.

Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.

Authors: Moore JE Purcaro MJ Pratt HE et al.

Corporate Authors: Moore JE Purcaro MJ Pratt HE et al.

Source: Nature [Nature] 2022 May; Vol. 605 (7909), pp. E3.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE; PubMed not MEDLINE

The rewiring of a terminal selector regulatory cascade generates convergent neuronal laterality.

Authors: Castro, Dylan L. Dimov, Ivan M. Mackie, Marisa et al.

Source: PLoS Genetics. 2/11/2026, Vol. 22 Issue 2, p1-32. 32p.

Author Correction: A large-scale binding and functional map of human RNA-binding proteins.

Authors: Van Nostrand EL Freese P Pratt GA et al.

Source: Nature [Nature] 2021 Jan; Vol. 589 (7842), pp. E5.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE; PubMed not MEDLINE

miRScore: A rapid and precise microRNA validation tool.

Authors: Vanek, Allison Griffiths-Jones, Sam Meyers, Blake C. et al.

Source: PLoS Computational Biology. 11/3/2025, Vol. 21 Issue 10, p1-15. 15p.

Salty Battle to Sudden Death: Young vs. Old, Brain vs. Heart.

Authors: Iyer, Shruthi H. Simeone, Kristina A.

Source: Epilepsy Currents. Nov/Dec2024, Vol. 24 Issue 6, p437-439. 3p.

Decoupling between activation time and steady-state level in input-output responses.

Authors: Ravanelli, Giorgio Nam, Kee-Myoung Gunawardena, Jeremy et al.

Source: PLoS Computational Biology. 5/15/2026, Vol. 22 Issue 5, p1-37. 37p.

Clusters of deep intronic RbFox motifs embedded in large assembly of splicing regulators sequences regulate alternative splicing.

Authors: Tomassoni-Ardori, Francesco Palko, Mary Ellen Galloux, Melissa et al.

Source: PLoS Genetics. 9/9/2025, Vol. 21 Issue 9, p1-25. 25p.

Charting the equine miRNA landscape: An integrated pipeline and browser for annotating, quantifying, and visualizing expression.

Authors: Cullen, Jonah N. Cieslak, Jakub Petersen, Jessica L. et al.

Source: PLoS Genetics. 9/5/2025, Vol. 21 Issue 9, p1-29. 29p.

HSV ICP27 hijacks host splicing factor SRSF3 to regulate pre-mRNA splicing and export for viral gene expression and immune evasion.

Authors: Tang, Shuang Patel, Amita Takeda, Kazuyo et al.

Source: PLoS Pathogens. 4/10/2026, Vol. 22 Issue 4, p1-23. 23p.

Expanding and improving analyses of nucleotide recoding RNA-seq experiments with the EZbakR suite.

Authors: Vock, Isaac W. Mabin, Justin W. Machyna, Martin et al.

Source: PLoS Computational Biology. 7/3/2025, Vol. 21 Issue 7, p1-21. 21p.

The MIR157–SPL15 module regulates flowering and inflorescence development in Arabidopsis thaliana under short days and in Arabis alpina.

Authors: Roggen, Adrian Lloret, Alba Miotto, Yohanna et al.

Source: PLoS Genetics. 9/2/2025, Vol. 21 Issue 9, p1-29. 29p.

Ohno-miRNAs: miRNA pairs derived from whole-genome duplication.

Authors: Agasso, Leonardo Molineris, Ivan Caselle, Michele

Source: PLoS Computational Biology. 12/3/2025, Vol. 21 Issue 12, p1-22. 22p.

Functional analysis of CYP4B1 enzymes from apes and humans uncovers evolutionary hot spots for adaptations of the catalytical function.

Authors: Hüsken, Saskia Röder, Annika Ptok, Johannes et al.

Source: PLoS Genetics. 6/27/2025, Vol. 21 Issue 6, p1-28. 28p.

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Widespread naturally variable human exons aid genetic interpretation.

Authors: Jacobs HN Gorissen BL Guez J et al.

Source: Nature communications [Nat Commun] 2025 Dec 16; Vol. 16 (1), pp. 11345. Date of Electronic Publication: 2025 Dec 16.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

KATMAP infers splicing factor activity and regulatory targets from knockdown data.

Authors: McGurk MP McWatters DC Burge CB

Source: Nature biotechnology [Nat Biotechnol] 2025 Nov 04. Date of Electronic Publication: 2025 Nov 04.

Publication Type: Journal Article

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

Expression levels of miRNA 22-5p and miRNA 337-5p in bladder cancer.

Authors: Dagdeviren, Mehmet Aydin Oguzkan, Sibel Bayil Ozaslan, Mehmet et al.

Source: Indian Journal of Medical Research. Mar2026, Vol. 163 Issue 3, p1-5. 5p.

A gene-specific RNA enrichment protocol for nanopore direct-RNA sequencing.

Authors: Dyrendalsli, Maja Bele Løkke, Cecilie Einvik, Christer

Source: PLoS ONE. 2/11/2026, Vol. 21 Issue 2, p1-9. 9p.

The splice of life: how alternative splicing shapes regulatory and phenotypic evolution.

Authors: Hunter CE Xing Y

Source: The EMBO journal [EMBO J] 2026 Mar; Vol. 45 (6), pp. 1878-1888. Date of Electronic Publication: 2026 Jan 16.

Publication Type: Journal Article; Review

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 8208664 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1460-2075 (Electronic) Linking ISSN: 02614189 NLM ISO Abbreviation: EMBO J Subsets: MEDLINE