Search Results - "Burkhardt DB"

Active learning framework leveraging transcriptomics identifies modulators of disease phenotypes.

Authors: DeMeo B Nesbitt C Miller SA et al.

Source: Science (New York, N.Y.) [Science] 2025 Nov 27; Vol. 390 (6776), pp. eadi8577. Date of Electronic Publication: 2025 Nov 27.

Publication Type: Journal Article

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity.

Authors: Venkat A Youlten SE San Juan BP et al.

Source: Cancer discovery [Cancer Discov] 2025 Oct 06; Vol. 15 (10), pp. 2139-2165.

Publication Type: Journal Article

Journal Info: Publisher: American Association for Cancer Research Country of Publication: United States NLM ID: 101561693 Publication Model: Print Cited Medium: Internet ISSN: 2159-8290 (Electronic) Linking ISSN: 21598274 NLM ISO Abbreviation: Cancer Discov Subsets: MEDLINE

Defining and benchmarking open problems in single-cell analysis.

Authors: Luecken MD Gigante S Burkhardt DB et al.

Corporate Authors: Luecken MD Gigante S Burkhardt DB et al.

Source: Nature biotechnology [Nat Biotechnol] 2025 Jul; Vol. 43 (7), pp. 1035-1040.

Publication Type: Letter

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE; In Process

How to build the virtual cell with artificial intelligence: Priorities and opportunities.

Authors: Bunne C Roohani Y Rosen Y et al.

Source: Cell [Cell] 2024 Dec 12; Vol. 187 (25), pp. 7045-7063.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

Modeling uniquely human gene regulatory function via targeted humanization of the mouse genome.

Authors: Dutrow EV Emera D Yim K et al.

Source: Nature communications [Nat Commun] 2022 Jan 13; Vol. 13 (1), pp. 304. Date of Electronic Publication: 2022 Jan 13.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities.

Authors: Bunne C Roohani Y Rosen Y et al.

Source: ArXiv [ArXiv] 2024 Oct 14. Date of Electronic Publication: 2024 Oct 14.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101759493 Publication Model: Electronic Cited Medium: Internet ISSN: 2331-8422 (Electronic) Linking ISSN: 23318422 NLM ISO Abbreviation: ArXiv Subsets: PubMed not MEDLINE

Defining and benchmarking open problems in single-cell analysis.

Authors: Luecken MD Gigante S Burkhardt DB et al.

Corporate Authors: Luecken MD Gigante S Burkhardt DB et al.

Source: Research square [Res Sq] 2024 Apr 04. Date of Electronic Publication: 2024 Apr 04.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101768035 Publication Model: Electronic Cited Medium: Internet ISSN: 2693-5015 (Electronic) Linking ISSN: 26935015 NLM ISO Abbreviation: Res Sq Subsets: PubMed not MEDLINE

Publisher Correction: MLL-AF9 initiates transformation from fast-proliferating myeloid progenitors.

Authors: Chen X Burkhardt DB Hartman AA et al.

Source: Nature communications [Nat Commun] 2020 Jan 29; Vol. 11 (1), pp. 681. Date of Electronic Publication: 2020 Jan 29.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE; PubMed not MEDLINE

MLL-AF9 initiates transformation from fast-proliferating myeloid progenitors.

Authors: Chen X Burkhardt DB Hartman AA et al.

Source: Nature communications [Nat Commun] 2019 Dec 18; Vol. 10 (1), pp. 5767. Date of Electronic Publication: 2019 Dec 18.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Immune cells and their inflammatory mediators modify β cells and cause checkpoint inhibitor-induced diabetes.

Authors: Perdigoto AL Deng S Du KC et al.

Source: JCI insight [JCI Insight] 2022 Sep 08; Vol. 7 (17). Date of Electronic Publication: 2022 Sep 08.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Society for Clinical Investigation Country of Publication: United States NLM ID: 101676073 Publication Model: Electronic Cited Medium: Internet ISSN: 2379-3708 (Electronic) Linking ISSN: 23793708 NLM ISO Abbreviation: JCI Insight Subsets: MEDLINE

Mapping Phenotypic Plasticity upon the Cancer Cell State Landscape Using Manifold Learning.

Authors: Burkhardt DB San Juan BP Lock JG et al.

Source: Cancer discovery [Cancer Discov] 2022 Aug 05; Vol. 12 (8), pp. 1847-1859.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Association for Cancer Research Country of Publication: United States NLM ID: 101561693 Publication Model: Print Cited Medium: Internet ISSN: 2159-8290 (Electronic) Linking ISSN: 21598274 NLM ISO Abbreviation: Cancer Discov Subsets: MEDLINE

Multiscale PHATE identifies multimodal signatures of COVID-19.

Authors: Kuchroo M Huang J Wong P et al.

Corporate Authors: Kuchroo M Huang J Wong P et al.

Source: Nature biotechnology [Nat Biotechnol] 2022 May; Vol. 40 (5), pp. 681-691. Date of Electronic Publication: 2022 Feb 28.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

Generating hard-to-obtain information from easy-to-obtain information: Applications in drug discovery and clinical inference.

Authors: Amodio M Shung D Burkhardt DB et al.

Source: Patterns (New York, N.Y.) [Patterns (N Y)] 2021 Jun 17; Vol. 2 (7), pp. 100288. Date of Electronic Publication: 2021 Jun 17 (Print Publication: 2021).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 101767765 Publication Model: eCollection Cited Medium: Internet ISSN: 2666-3899 (Electronic) Linking ISSN: 26663899 NLM ISO Abbreviation: Patterns (N Y) Subsets: PubMed not MEDLINE

Quantifying the effect of experimental perturbations at single-cell resolution.

Authors: Burkhardt DB Stanley JS 3rd Tong A et al.

Source: Nature biotechnology [Nat Biotechnol] 2021 May; Vol. 39 (5), pp. 619-629. Date of Electronic Publication: 2021 Feb 08.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

Endocrine-Exocrine Signaling Drives Obesity-Associated Pancreatic Ductal Adenocarcinoma.

Authors: Chung KM Singh J Lawres L et al.

Source: Cell [Cell] 2020 May 14; Vol. 181 (4), pp. 832-847.e18. Date of Electronic Publication: 2020 Apr 17.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

Author Correction: Visualizing structure and transitions in high-dimensional biological data.

Authors: Moon KR van Dijk D Wang Z et al.

Source: Nature biotechnology [Nat Biotechnol] 2020 Jan; Vol. 38 (1), pp. 108.

Publication Type: Published Erratum

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE; PubMed not MEDLINE

Visualizing structure and transitions in high-dimensional biological data.

Authors: Moon KR van Dijk D Wang Z et al.

Source: Nature biotechnology [Nat Biotechnol] 2019 Dec; Vol. 37 (12), pp. 1482-1492. Date of Electronic Publication: 2019 Dec 03.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils.

Authors: Pold G Billings AF Blanchard JL et al.

Source: Applied and environmental microbiology [Appl Environ Microbiol] 2016 Oct 27; Vol. 82 (22), pp. 6518-6530. Date of Electronic Publication: 2016 Oct 27 (Print Publication: 2016).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 7605801 Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1098-5336 (Electronic) Linking ISSN: 00992240 NLM ISO Abbreviation: Appl Environ Microbiol Subsets: MEDLINE