Search Results - "Burkhart BW"

Archaeal family B DNA polymerase facilitates lagging strand DNA replication in the Thermococcales.

Authors: Liman GLS Black MD Potapov V et al.

Source: Nucleic acids research [Nucleic Acids Res] 2026 Apr 23; Vol. 54 (8).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Rerouting reductant flux via protein tethering enhances biohydrogen production in Thermococcus kodakarensis.

Authors: Williams SA Crosby DA Riley DM et al.

Source: Applied microbiology and biotechnology [Appl Microbiol Biotechnol] 2026 Mar 06; Vol. 110 (1). Date of Electronic Publication: 2026 Mar 06.

Publication Type: Journal Article

Journal Info: Publisher: Springer International Country of Publication: Germany NLM ID: 8406612 Publication Model: Electronic Cited Medium: Internet ISSN: 1432-0614 (Electronic) Linking ISSN: 01757598 NLM ISO Abbreviation: Appl Microbiol Biotechnol Subsets: MEDLINE

Removal and bypass of restriction modification systems increases transformation efficiency of Thermococcus kodakarensis.

Authors: Alon AM Sanders CM Burkhart BW et al.

Source: Frontiers in microbiology [Front Microbiol] 2026 Jul 07; Vol. 17, pp. 1855967. Date of Electronic Publication: 2026 Jul 07 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE

A sequence-specific RNA acetylation catalyst.

Authors: Thalalla Gamage S Howpay Manage S Sas-Chen A et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Mar 20; Vol. 53 (6).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Pan-modification profiling facilitates a cross-evolutionary dissection of the thermoregulated ribosomal epitranscriptome.

Authors: Garcia-Campos MA Georgeson J Nir R et al.

Source: Cell [Cell] 2025 Nov 26; Vol. 188 (24), pp. 6825-6844.e28. Date of Electronic Publication: 2025 Oct 22.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

The extensive m⁵C epitranscriptome of Thermococcus kodakarensis is generated by a suite of RNA methyltransferases that support thermophily.

Authors: Fluke KA Fuchs RT Tsai YL et al.

Source: Nature communications [Nat Commun] 2024 Aug 23; Vol. 15 (1), pp. 7272. Date of Electronic Publication: 2024 Aug 23.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Comprehensive nucleoside analysis of archaeal RNA modification profiles reveals an m⁷G in the conserved P loop of 23S rRNA.

Authors: Tsai YL Wolf EJ Fluke KA et al.

Source: Cell reports [Cell Rep] 2025 Apr 22; Vol. 44 (4), pp. 115471. Date of Electronic Publication: 2025 Mar 24.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

A sequence-specific RNA acetylation catalyst.

Authors: Thalalla Gamage S Howpay Manage S Sas-Chen A et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Oct 26. Date of Electronic Publication: 2024 Oct 26.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Archaeal histone-based chromatin structures regulate transcription elongation rates.

Authors: Wenck BR Vickerman RL Burkhart BW et al.

Source: Communications biology [Commun Biol] 2024 Feb 27; Vol. 7 (1), pp. 236. Date of Electronic Publication: 2024 Feb 27.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

Thermococcus kodakarensis TK0353 is a novel AP lyase with a new fold.

Authors: Caffrey PJ Eckenroth BE Burkhart BW et al.

Source: The Journal of biological chemistry [J Biol Chem] 2024 Jan; Vol. 300 (1), pp. 105503. Date of Electronic Publication: 2023 Nov 25.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 2985121R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1083-351X (Electronic) Linking ISSN: 00219258 NLM ISO Abbreviation: J Biol Chem Subsets: MEDLINE

Structure of histone-based chromatin in Archaea.

Authors: Mattiroli F Bhattacharyya S Dyer PN et al.

Source: Science (New York, N.Y.) [Science] 2017 Aug 11; Vol. 357 (6351), pp. 609-612.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

The Hyperthermophilic Restriction-Modification Systems of Thermococcus kodakarensis Protect Genome Integrity.

Authors: Zatopek KM Burkhart BW Morgan RD et al.

Source: Frontiers in microbiology [Front Microbiol] 2021 May 20; Vol. 12, pp. 657356. Date of Electronic Publication: 2021 May 20 (Print Publication: 2021).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE

Extended Archaeal Histone-Based Chromatin Structure Regulates Global Gene Expression in Thermococcus kodakarensis.

Authors: Sanders TJ Ullah F Gehring AM et al.

Source: Frontiers in microbiology [Front Microbiol] 2021 May 13; Vol. 12, pp. 681150. Date of Electronic Publication: 2021 May 13 (Print Publication: 2021).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE

Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping.

Authors: Sas-Chen A Thomas JM Matzov D et al.

Source: Nature [Nature] 2020 Jul; Vol. 583 (7817), pp. 638-643. Date of Electronic Publication: 2020 Jun 17.

Publication Type: Comparative Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Archaeosine Modification of Archaeal tRNA: Role in Structural Stabilization.

Authors: Turner B Burkhart BW Weidenbach K et al.

Source: Journal of bacteriology [J Bacteriol] 2020 Mar 26; Vol. 202 (8). Date of Electronic Publication: 2020 Mar 26 (Print Publication: 2020).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 2985120R Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1098-5530 (Electronic) Linking ISSN: 00219193 NLM ISO Abbreviation: J Bacteriol Subsets: MEDLINE

Biochemical reconstitution and genetic characterization of the major oxidative damage base excision DNA repair pathway in Thermococcus kodakarensis.

Authors: Gehring AM Zatopek KM Burkhart BW et al.

Source: DNA repair [DNA Repair (Amst)] 2020 Feb; Vol. 86, pp. 102767. Date of Electronic Publication: 2019 Dec 05.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 101139138 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1568-7856 (Electronic) Linking ISSN: 15687856 NLM ISO Abbreviation: DNA Repair (Amst) Subsets: MEDLINE

Distinct Physiological Roles of the Three Ferredoxins Encoded in the Hyperthermophilic Archaeon Thermococcus kodakarensis.

Authors: Burkhart BW Febvre HP Santangelo TJ

Source: MBio [mBio] 2019 Mar 05; Vol. 10 (2). Date of Electronic Publication: 2019 Mar 05.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101519231 Publication Model: Electronic Cited Medium: Internet ISSN: 2150-7511 (Electronic) NLM ISO Abbreviation: mBio Subsets: MEDLINE

An Archaeal Fluoride-Responsive Riboswitch Provides an Inducible Expression System for Hyperthermophiles.

Authors: Speed MC Burkhart BW Picking JW et al.

Source: Applied and environmental microbiology [Appl Environ Microbiol] 2018 Mar 19; Vol. 84 (7). Date of Electronic Publication: 2018 Mar 19 (Print Publication: 2018).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 7605801 Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1098-5336 (Electronic) Linking ISSN: 00992240 NLM ISO Abbreviation: Appl Environ Microbiol

Genome Replication in Thermococcus kodakarensis Independent of Cdc6 and an Origin of Replication.

Authors: Gehring AM Astling DP Matsumi R et al.

Source: Frontiers in microbiology [Front Microbiol] 2017 Oct 27; Vol. 8, pp. 2084. Date of Electronic Publication: 2017 Oct 27 (Print Publication: 2017).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE

The GAN Exonuclease or the Flap Endonuclease Fen1 and RNase HII Are Necessary for Viability of Thermococcus kodakarensis.

Authors: Burkhart BW Cubonova L Heider MR et al.

Source: Journal of bacteriology [J Bacteriol] 2017 Jun 13; Vol. 199 (13). Date of Electronic Publication: 2017 Jun 13 (Print Publication: 2017).

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 2985120R Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1098-5530 (Electronic) Linking ISSN: 00219193 NLM ISO Abbreviation: J Bacteriol Subsets: MEDLINE