Search Results - "Burkowski, Forbes"

A Peaceman-Rachford Splitting Method for the Protein Side-Chain Positioning Problem.

Authors: Burkowski, Forbes Im, Haesol Wolkowicz, Henry

Source: INFORMS Journal on Computing. Jul/Aug2025, Vol. 37 Issue 4, p962-976. 15p.

Efficient Use of Semidefinite Programming for Selection of Rotamers in Protein Conformations.

Authors: Burkowski, Forbes Yuen-Lam Cheung Wolkowicz, Henry

Source: INFORMS Journal on Computing. Fall2014, Vol. 26 Issue 4, p748-766. 19p.

An Algebra for Hierarchically Organized Text-Dominated Databases.

Authors: Burkowski, Forbes J.

Source: Information Processing and Management. 1992 28(3):333-348.

Peer Reviewed: Y

Page Count: 16

Descriptors: Algebra, Database Design, Full Text Databases, Information Retrieval, Models, Structural Analysis (Linguistics)

Proximity and priority: applying a gene expression algorithm to the Traveling Salesperson Problem

Authors: Burkowski, Forbes J.¹ fjburkow@plg.uwaterloo.ca

Source: Parallel Computing. May2004, Vol. 30 Issue 5/6, p803-816. 14p.

Subjects: Gene expression, Algorithms, Foundations of arithmetic, Sales personnel

Using kernelized partial canonical correlation analysis to study directly coupled side chains and allostery in small G proteins.

Authors: Soltan Ghoraie L Burkowski F Zhu M

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2015 Jun 15; Vol. 31 (12), pp. i124-32.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Sparse networks of directly coupled, polymorphic, and functional side chains in allosteric proteins.

Authors: Soltan Ghoraie L Burkowski F Zhu M

Source: Proteins [Proteins] 2015 Mar; Vol. 83 (3), pp. 497-516. Date of Electronic Publication: 2015 Jan 31.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

Generating conformational transitions using the euclidean distance matrix.

Authors: Li XB Burkowski F

Source: IEEE transactions on nanobioscience [IEEE Trans Nanobioscience] 2015 Mar; Vol. 14 (2), pp. 203-9. Date of Electronic Publication: 2015 Jan 16.

Publication Type: Journal Article

Journal Info: Publisher: Institute of Electrical and Electronics Engineers Country of Publication: United States NLM ID: 101152869 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1558-2639 (Electronic) Linking ISSN: 15361241 NLM ISO Abbreviation: IEEE Trans Nanobioscience Subsets: MEDLINE

Residue-Specific Side-Chain Polymorphisms via Particle Belief Propagation.

Authors: Ghoraie LS Burkowski F Li SC et al.

Source: IEEE/ACM transactions on computational biology and bioinformatics [IEEE/ACM Trans Comput Biol Bioinform] 2014 Jan-Feb; Vol. 11 (1), pp. 33-41.

Publication Type: Journal Article

Journal Info: Publisher: IEEE Computer Society Country of Publication: United States NLM ID: 101196755 Publication Model: Print Cited Medium: Internet ISSN: 1557-9964 (Electronic) Linking ISSN: 15455963 NLM ISO Abbreviation: IEEE/ACM Trans Comput Biol Bioinform Subsets: MEDLINE

Using kernel alignment to select features of molecular descriptors in a QSAR study.

Authors: Wong WW Burkowski FJ

Source: IEEE/ACM transactions on computational biology and bioinformatics [IEEE/ACM Trans Comput Biol Bioinform] 2011 Sep-Oct; Vol. 8 (5), pp. 1373-84.

Publication Type: Journal Article

Journal Info: Publisher: IEEE Computer Society Country of Publication: United States NLM ID: 101196755 Publication Model: Print Cited Medium: Internet ISSN: 1557-9964 (Electronic) Linking ISSN: 15455963 NLM ISO Abbreviation: IEEE/ACM Trans Comput Biol Bioinform Subsets: MEDLINE

A constructive approach for discovering new drug leads: Using a kernel methodology for the inverse-QSAR problem.

Authors: Wong WW Burkowski FJ

Source: Journal of cheminformatics [J Cheminform] 2009 Apr 28; Vol. 1, pp. 4. Date of Electronic Publication: 2009 Apr 28.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101516718 Publication Model: Electronic Cited Medium: Internet ISSN: 1758-2946 (Electronic) Linking ISSN: 17582946 NLM ISO Abbreviation: J Cheminform Subsets: PubMed not MEDLINE

Predicting multiple binding modes using a kernel method based on a vector space model molecular descriptor.

Authors: Burkowski FJ Wong WW

Source: International journal of computational biology and drug design [Int J Comput Biol Drug Des] 2009; Vol. 2 (1), pp. 58-80.

Publication Type: Journal Article

Journal Info: Publisher: Inderscience Enterprise Country of Publication: England NLM ID: 101479540 Publication Model: Print Cited Medium: Print ISSN: 1756-0756 (Print) Linking ISSN: 17560756 NLM ISO Abbreviation: Int J Comput Biol Drug Des Subsets: MEDLINE