Search Results - "Burley SK"

Scaffold-Lab: Critical evaluation and ranking of protein backbone generation methods in a unified framework.

Authors: Zheng, Zhuoqi Zhang, Bo Zhong, Bozitao et al.

Source: PLoS Computational Biology. 5/22/2026, Vol. 22 Issue 5, p1-21. 21p.

Synergistic attenuation of Aeromonas dhakensis virulence by dual deletion of PhoBR and KdpE two-component systems and its protective immunity in zebrafish.

Authors: Li, Xuesong Wu, Yukun Wang, Mengqi et al.

Source: Applied Microbiology & Biotechnology; 5/15/2026, Vol. 110 Issue 1, p1-14, 14p

Serotonin signaling modulates growth and motility in juvenile Fasciola hepatica.

Authors: Robb, Emily Muise, Sarah Watt, Lana et al.

Source: PLoS Neglected Tropical Diseases. 3/26/2026, Vol. 20 Issue 3, p1-24. 24p.

Yad fimbriae are triggered by host cues and enhance extraintestinal pathogenic Escherichia coli tissue colonisation during bloodstream infection.

Authors: Ellison, Chloe Cottam, Curtis Lian, Zheng Jie et al.

Source: PLoS Pathogens. 6/1/2026, Vol. 22 Issue 6, p1-21. 21p.

Integrated computational and experimental analysis explores FOLH1 expression patterns across cancers and nominates melatonin as a potential modulator in prostate cancer models.

Authors: Zhang, Rui Zhou, Junyu Dong, Sihan et al.

Source: PLoS Computational Biology. 5/22/2026, Vol. 22 Issue 5, p1-35. 35p.

A predicted structural interactome reveals binding interference from intrinsically disordered regions.

Authors: Peng, Junhui Zhao, Li

Source: PLoS Computational Biology. 1/22/2026, Vol. 22 Issue 1, p1-18. 18p.

Advancing FAIR data towards comparable, organized, predictive AI-ready data for community validation.

Authors: Wood-Charlson EM Åkerström WN Anderson L et al.

Source: Communications biology [Commun Biol] 2026 Jul 18; Vol. 9 (1). Date of Electronic Publication: 2026 Jul 18.

Publication Type: Journal Article; Review

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

A newly isolated Streptomyces nigra strain for the biotechnological production of melanin.

Authors: Cimini, Donatella D'ambrosio, Sergio Restaino, Odile Francesca et al.

Source: Applied Microbiology & Biotechnology; 1/6/2026, Vol. 110 Issue 1, p1-17, 17p

Ten rules for a structural bioinformatic analysis.

Authors: Wankowicz, Stephanie A.^1,2 (AUTHOR) stephanie@wankowiczlab.com

Source: PLoS Computational Biology. 10/31/2025, Vol. 21 Issue 10, p1-15. 15p.

Integrating AlphaFold2 models and clinical data to improve the assessment of Short Linear Motifs (SLiMs) and their variants' pathogenicity.

Authors: Brunello, Franco Gino Erra, Lorenzo Nicola, Juan et al.

Source: PLoS Computational Biology. 8/4/2025, Vol. 21 Issue 8, p1-19. 19p.

A toxin/antitoxin system targeting the replication sliding-clamp induces competence in Streptococcus pneumoniae.

Authors: Maziero, Mickaël Juillot, Dimitri Mortier-Barrière, Isabelle et al.

Source: PLoS Genetics. 12/29/2025, Vol. 21 Issue 12, p1-24. 24p.

Deep learning model of post-translational modification regulating liquid-liquid phase separation.

Authors: Hong, Xiaokun Lv, Jiyang Li, Zhengxin et al.

Source: Communications Chemistry. 12/8/2025, Vol. 8 Issue 1, p1-11. 11p.

PepLM-GNN: A graph neural network framework leveraging pre-trained language models for peptide-protein binding prediction.

Authors: Yan, Ke Li, Meijing Chen, Shutao et al.

Source: PLoS Computational Biology. 3/24/2026, Vol. 22 Issue 3, p1-19. 19p.

ModelCIF Update: Supporting Emerging Classes of Computational Macromolecular Models.

Authors: Tauriello G Lill Y Sgrignani J et al.

Source: Journal of molecular biology [J Mol Biol] 2026 Sep 15; Vol. 438 (18), pp. 169658. Date of Electronic Publication: 2026 Jan 22.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE

Where and how to house big data on small fragments.

Authors: Erlanson DA Burley SK Fearon D et al.

Source: Nature communications [Nat Commun] 2025 May 05; Vol. 16 (1), pp. 4179. Date of Electronic Publication: 2025 May 05.

Publication Type: Journal Article; Review

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

What will be the future of computational biology for macromolecules in the era of AI?

Authors: Elofsson, Arne Ben-Tal, Nir

Source: PLoS Computational Biology. 7/8/2026, Vol. 22 Issue 7, p1-7. 7p.

Identification of a novel mutant allele of the LIKE EARLY STARVATION 1 gene in rice (Oryza sativa L.) using QTL-seq.

Authors: Shim, Kyu-Chan Kim, HyunJung Yoon, Mi-Ra et al.

Source: G3: Genes | Genomes | Genetics. Jul2026, Vol. 16 Issue 7, p1-11. 11p.

Expanding diversity of tick-borne phleboviruses (Phlebovirus mukawaense, Mudanjiang phlebovirus, Gomselga Virus, and Onega tick phlebovirus) in Russia.

Authors: Kartashov, Mikhail Y. Kurushina, Valentina Y. Yanshin, Alexey O. et al.

Source: PLoS ONE. 6/2/2026, Vol. 21 Issue 6, p1-19. 19p.

Multi-omics and pan-cancer analysis revealed common molecular signatures to disclose multitargeted anticancer agents through network pharmacology approach.

Authors: Sarker, Hriddhi Farid, Farhad Bin Kamrun, Marguba et al.

Source: PLoS ONE. 6/1/2026, Vol. 21 Issue 6, p1-32. 32p.

A genetic screen reveals a key role for Reg1 in 2-deoxyglucose sensing and yeast AMPK inhibition.

Authors: Ballin, Alberto Albanèse, Véronique Miled, Samia et al.

Source: PLoS Genetics. 10/9/2025, Vol. 21 Issue 10, p1-31. 31p.