Search Results - "Bystroff, C."

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Bacterial production of recombinant contraceptive vaccine antigen from CatSper displayed on a human papilloma virus-like particle.

Authors: Nand, K.N. Jordan, T.B. Yuan, X. et al.

Source: Vaccine. Nov2023, Vol. 41 Issue 46, p6791-6801. 11p.

Immobilization and enhancement of a heterodimeric fluorescence biosensor in fibrous protein biomaterials.

Authors: Booth RM Jons A Gong X et al.

Source: Protein science : a publication of the Protein Society [Protein Sci] 2025 May; Vol. 34 (5), pp. e70119.

Publication Type: Journal Article

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

Electrostatic potential is the dominant force in antigenic selection of naïve T-cells and B-cells for activation and maturation.

Authors: Nand KN Bystroff C

Source: Immunology letters [Immunol Lett] 2025 Dec; Vol. 276, pp. 107037. Date of Electronic Publication: 2025 May 23.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier/North-Holland Biomedical Press Country of Publication: Netherlands NLM ID: 7910006 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0542 (Electronic) Linking ISSN: 01652478 NLM ISO Abbreviation: Immunol Lett Subsets: MEDLINE

Challenges and Solutions for Leave-One-Out Biosensor Design in the Context of a Rugged Fitness Landscape.

Authors: Banerjee S Fraser K Crone DE et al.

Source: Sensors (Basel, Switzerland) [Sensors (Basel)] 2024 Oct 01; Vol. 24 (19). Date of Electronic Publication: 2024 Oct 01.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101204366 Publication Model: Electronic Cited Medium: Internet ISSN: 1424-8220 (Electronic) Linking ISSN: 14248220 NLM ISO Abbreviation: Sensors (Basel) Subsets: MEDLINE

Footprints to singularity: A global population model explains late 20th century slow-down and predicts peak within ten years.

Authors: Bystroff C; Dept of Biological Sciences, Dept of Computer Science, Rensselaer Polytechnic Institute, Troy, NY, United Sates of America.

Source: PloS one [PLoS One] 2021 May 20; Vol. 16 (5), pp. e0247214. Date of Electronic Publication: 2021 May 20 (Print Publication: 2021).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Correction to "Mispacking and the Fitness Landscape of the Green Fluorescent Protein Chromophore Milieu".

Authors: Banerjee S Schenkelberg CD Jordan TB et al.

Source: Biochemistry [Biochemistry] 2023 Oct 03; Vol. 62 (19), pp. 2894. Date of Electronic Publication: 2023 Sep 14.

Publication Type: Published Erratum

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 0370623 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-4995 (Electronic) Linking ISSN: 00062960 NLM ISO Abbreviation: Biochemistry Subsets: MEDLINE; PubMed not MEDLINE

Better together: Elements of successful scientific software development in a distributed collaborative community.

Authors: Koehler Leman J Weitzner BD Renfrew PD et al.

Corporate Authors: Koehler Leman J Weitzner BD Renfrew PD et al.

Source: PLoS computational biology [PLoS Comput Biol] 2020 May 04; Vol. 16 (5), pp. e1007507. Date of Electronic Publication: 2020 May 04 (Print Publication: 2020).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Fast design of arbitrary length loops in proteins using InteractiveRosetta.

Authors: Hooper WF Walcott BD Wang X et al.

Source: BMC bioinformatics [BMC Bioinformatics] 2018 Sep 24; Vol. 19 (1), pp. 337. Date of Electronic Publication: 2018 Sep 24.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Protein backbone ensemble generation explores the local structural space of unseen natural homologs.

Authors: Schenkelberg CD Bystroff C

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2016 May 15; Vol. 32 (10), pp. 1454-61. Date of Electronic Publication: 2016 Jan 18.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Influence of surface charge, binding site residues and glycosylation on Thielavia terrestris cutinase biochemical characteristics.

Authors: Shirke AN Basore D Holton S et al.

Source: Applied microbiology and biotechnology [Appl Microbiol Biotechnol] 2016 May; Vol. 100 (10), pp. 4435-46. Date of Electronic Publication: 2016 Jan 13.

Publication Type: Journal Article

Journal Info: Publisher: Springer International Country of Publication: Germany NLM ID: 8406612 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-0614 (Electronic) Linking ISSN: 01757598 NLM ISO Abbreviation: Appl Microbiol Biotechnol Subsets: MEDLINE

Toward rational thermostabilization of Aspergillus oryzae cutinase: Insights into catalytic and structural stability.

Authors: Shirke AN Basore D Butterfoss GL et al.

Source: Proteins [Proteins] 2016 Jan; Vol. 84 (1), pp. 60-72. Date of Electronic Publication: 2015 Nov 26.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite.

Authors: Schenkelberg CD Bystroff C

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2015 Dec 15; Vol. 31 (24), pp. 4023-5. Date of Electronic Publication: 2015 Aug 26.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Genetic Defects in DNAH2 Underlie Male Infertility With Multiple Morphological Abnormalities of the Sperm Flagella in Humans and Mice.

Authors: Hwang JY Nawaz S Choi J et al.

Source: Frontiers in cell and developmental biology [Front Cell Dev Biol] 2021 Apr 23; Vol. 9, pp. 662903. Date of Electronic Publication: 2021 Apr 23 (Print Publication: 2021).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Media S.A Country of Publication: Switzerland NLM ID: 101630250 Publication Model: eCollection Cited Medium: Print ISSN: 2296-634X (Print) Linking ISSN: 2296634X NLM ISO Abbreviation: Front Cell Dev Biol Subsets: PubMed not MEDLINE

Exploring the folding pathway of green fluorescent protein through disulfide engineering.

Authors: Pitman DJ Banerjee S Macari SJ et al.

Source: Protein science : a publication of the Protein Society [Protein Sci] 2015 Mar; Vol. 24 (3), pp. 341-53. Date of Electronic Publication: 2015 Jan 13.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

Improving computational efficiency and tractability of protein design using a piecemeal approach. A strategy for parallel and distributed protein design.

Authors: Pitman DJ Schenkelberg CD Huang YM et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2014 Apr 15; Vol. 30 (8), pp. 1138-1145. Date of Electronic Publication: 2013 Dec 25.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Green-lighting green fluorescent protein: faster and more efficient folding by eliminating a cis-trans peptide isomerization event.

Authors: Rosenman DJ Huang YM Xia K et al.

Source: Protein science : a publication of the Protein Society [Protein Sci] 2014 Apr; Vol. 23 (4), pp. 400-10. Date of Electronic Publication: 2014 Jan 30.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

Quantitative in vivo solubility and reconstitution of truncated circular permutants of green fluorescent protein.

Authors: Huang YM Nayak S Bystroff C

Source: Protein science : a publication of the Protein Society [Protein Sci] 2011 Nov; Vol. 20 (11), pp. 1775-80. Date of Electronic Publication: 2011 Oct 05.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

Comparative void-volume analysis of psychrophilic and mesophilic enzymes: Structural bioinformatics of psychrophilic enzymes reveals sources of core flexibility.

Authors: Paredes DI Watters K Pitman DJ et al.

Source: BMC structural biology [BMC Struct Biol] 2011 Oct 20; Vol. 11, pp. 42. Date of Electronic Publication: 2011 Oct 20.

Publication Type: Comparative Study; Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101088689 Publication Model: Electronic Cited Medium: Internet ISSN: 1472-6807 (Electronic) Linking ISSN: 14726807 NLM ISO Abbreviation: BMC Struct Biol Subsets: MEDLINE

Constraining local structure can speed up folding by promoting structural polarization of the folding pathway.

Authors: Buck PM Bystroff C

Source: Protein science : a publication of the Protein Society [Protein Sci] 2011 Jun; Vol. 20 (6), pp. 959-69. Date of Electronic Publication: 2011 Apr 12.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE