Search Results - "Colavin, Alexandre"

Extracting phylogenetic dimensions of coevolution reveals hidden functional signals.

Authors: Colavin, Alexandre Atolia, Esha Bitbol, Anne-Florence et al.

Source: Scientific Reports. 1/17/2022, Vol. 12 Issue 1, p1-19. 19p.

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Effects of polymerization and nucleotide identity on the conformational dynamics of the bacterial actin homolog MreB.

Authors: Colavin, Alexandre Hsin, Jen Casey Huang, Kerwyn

Source: Proceedings of the National Academy of Sciences of the United States of America. 3/4/2014, Vol. 111 Issue 9, p3585-3590. 6p.

Subjects: Polymerization, Nucleotide sequence, Nucleotides, Eukaryotes, Hydrolysis

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Conservation of conformational dynamics across prokaryotic actins.

Authors: Ng, Natalie Shi, Handuo Colavin, Alexandre et al.

Source: PLoS Computational Biology. 4/5/2019, Vol. 15 Issue 4, p1-19. 19p. 1 Diagram, 4 Graphs.

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Harnessing genotype and phenotype data for population-scale variant classification using large language models and bayesian inference.

Authors: Manders, Toby R. Tan, Christopher A. Kobayashi, Yuya et al.

Source: Human Genetics. Jun2025, Vol. 144 Issue 6, p605-614. 10p.

Rapid, precise quantification of bacterial cellular dimensions across a genomic-scale knockout library.

Authors: Tristan Ursell Timothy K. Lee Daisuke Shiomi et al.

Source: BMC Biology. 2/21/2017, Vol. 15, p1-15. 15p.

Coordination of peptidoglycan synthesis and outer membrane constriction during Escherichia coli cell division.

Authors: Gray, Andrew N. Egan, Alexander J. F. van't Veer, Inge L. et al.

Source: eLife. May2015, p1-29. 29p.

THE IMPACT OF MACHINE LEARNING MODELS IN REDUCING VARIANTS OF UNCERTAIN SIGNIFICANCE (VUS) FOR INDIVIDUALS FROM UNDERREPRESENTED POPULATIONS WHO ARE UNDERGOING TESTING FOR INHERITED METABOLIC DISORDERS.

Authors: Johnson, Britt Facio, Flavia Morales, Ana et al.

Source: Molecular Genetics & Metabolism. Mar2023, Vol. 138 Issue 3, pN.PAG-N.PAG. 1p.

Cover Image, Volume 193, Number 3, September 2023.

Authors: Aradhya, Swaroop Facio, Flavia M. Metz, Hillery et al.

Source: American journal of medical genetics. Part C, Seminars in medical genetics Sep2023; Vol. 193 (3).

Journal Info: Publisher: Wiley-Blackwell ISSN: 1552-4868

Applications of artificial intelligence in clinical laboratory genomics.

Authors: Aradhya S Facio FM Metz H et al.

Source: American journal of medical genetics. Part C, Seminars in medical genetics [Am J Med Genet C Semin Med Genet] 2023 Sep; Vol. 193 (3), pp. e32057. Date of Electronic Publication: 2023 Jul 28.

Publication Type: Journal Article; Review

Journal Info: Publisher: Wiley-Blackwell Country of Publication: United States NLM ID: 101235745 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1552-4876 (Electronic) Linking ISSN: 15524868 NLM ISO Abbreviation: Am J Med Genet C Semin Med Genet Subsets: MEDLINE

Systematically testing human HMBS missense variants to reveal mechanism and pathogenic variation.

Authors: van Loggerenberg W Sowlati-Hashjin S Weile J et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Feb 06. Date of Electronic Publication: 2023 Feb 06.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

RodZ modulates geometric localization of the bacterial actin MreB to regulate cell shape.

Authors: Colavin A Shi H Huang KC

Source: Nature communications [Nat Commun] 2018 Mar 29; Vol. 9 (1), pp. 1280. Date of Electronic Publication: 2018 Mar 29.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Rapid, precise quantification of bacterial cellular dimensions across a genomic-scale knockout library.

Authors: Ursell T Lee TK Shiomi D et al.

Source: BMC biology [BMC Biol] 2017 Feb 21; Vol. 15 (1), pp. 17. Date of Electronic Publication: 2017 Feb 21.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7007 (Electronic) Linking ISSN: 17417007 NLM ISO Abbreviation: BMC Biol Subsets: MEDLINE

Coupling between Protein Stability and Catalytic Activity Determines Pathogenicity of G6PD Variants.

Authors: Cunningham AD Colavin A Huang KC et al.

Source: Cell reports [Cell Rep] 2017 Mar 14; Vol. 18 (11), pp. 2592-2599.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

Strain Library Imaging Protocol for high-throughput, automated single-cell microscopy of large bacterial collections arrayed on multiwell plates.

Authors: Shi H Colavin A Lee TK et al.

Source: Nature protocols [Nat Protoc] 2017 Feb; Vol. 12 (2), pp. 429-438. Date of Electronic Publication: 2017 Jan 26.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101284307 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1750-2799 (Electronic) Linking ISSN: 17502799 NLM ISO Abbreviation: Nat Protoc Subsets: MEDLINE

Systematic perturbation of cytoskeletal function reveals a linear scaling relationship between cell geometry and fitness.

Authors: Monds RD Lee TK Colavin A et al.

Source: Cell reports [Cell Rep] 2014 Nov 20; Vol. 9 (4), pp. 1528-37. Date of Electronic Publication: 2014 Nov 13.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

Rod-like bacterial shape is maintained by feedback between cell curvature and cytoskeletal localization.

Authors: Ursell TS Nguyen J Monds RD et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2014 Mar 18; Vol. 111 (11), pp. E1025-34. Date of Electronic Publication: 2014 Feb 18.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE