Search Results - "Conte, Mattia"

Polymer Physics Models Reveal Structural Folding Features of Single-Molecule Gene Chromatin Conformations.

Authors: Conte, Mattia Abraham, Alex Esposito, Andrea et al.

Source: International Journal of Molecular Sciences. Sep2024, Vol. 25 Issue 18, p10215. 16p.

Unveiling the Machinery behind Chromosome Folding by Polymer Physics Modeling.

Authors: Conte, Mattia Esposito, Andrea Vercellone, Francesca et al.

Source: International Journal of Molecular Sciences. Feb2023, Vol. 24 Issue 4, p3660. 19p.

Polymer Models of Chromatin Imaging Data in Single Cells.

Authors: Conte, Mattia Chiariello, Andrea M. Abraham, Alex et al.

Source: Algorithms. Sep2022, Vol. 15 Issue 9, p330-330. 8p.

A Multiscale Perspective on Chromatin Architecture through Polymer Physics.

Authors: Vercellone, Francesca Chiariello, Andrea M. Esposito, Andrea et al.

Source: Physiology. May2025, Vol. 40 Issue 3, p291-300.

Efficient computational implementation of polymer physics models to explore chromatin structure.

Authors: Conte, Mattia Esposito, Andrea Fiorillo, Luca et al.

Source: International Journal of Parallel, Emergent & Distributed Systems. Jan2022, Vol. 37 Issue 1, p91-102. 12p.

Subjects: Cell nuclei, Chromosome structure, Molecular dynamics, Physics, Polymers, Chromatin

Physics-Based Modeling of Sparse Single-Cell Hi-C Uncovers Structural and Epigenetic Variability.

Authors: Vercellone, Francesca Kundu, Sumanta Esposito, Andrea et al.

Source: International Journal of Molecular Sciences. Jun2026, Vol. 27 Issue 11, p4803. 29p.

A modern challenge of polymer physics: Novel ways to study, interpret, and reconstruct chromatin structure.

Authors: Fiorillo, Luca Bianco, Simona Esposito, Andrea et al.

Source: WIREs: Computational Molecular Science; Jul/Aug2020, Vol. 10 Issue 4, p1-13, 13p

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The Physics of DNA Folding: Polymer Models and Phase-Separation.

Authors: Esposito, Andrea Abraham, Alex Conte, Mattia et al.

Source: Polymers (20734360). May2022, Vol. 14 Issue 9, p1918-1918. 15p.

Computational approaches from polymer physics to investigate chromatin folding.

Authors: Bianco, Simona Chiariello, Andrea M. Conte, Mattia et al.

Source: Current Opinion in Cell Biology. Jun2020, Vol. 64, p10-17. 8p.

Physical mechanisms of chromatin spatial organization.

Authors: Chiariello, Andrea M. Bianco, Simona Esposito, Andrea et al.

Source: FEBS Journal. Mar2022, Vol. 289 Issue 5, p1180-1190. 11p.

Polymer models of chromatin organization in virally infected cells.

Authors: Fontana, Andrea Tafuri, Fabrizio Abraham, Alex et al.

Source: Biochemical Society Transactions. Feb2025, Vol. 53 Issue 1, p249-258. 10p.

Loss of structural specificity in 3D genome organization upon viral infection is predicted by polymer physics.

Authors: Fontana, Andrea Bianco, Simona Tafuri, Fabrizio et al.

Source: Journal of Chemical Physics. 1/7/2025, Vol. 162 Issue 1, p1-11. 11p.

Polymer models are a versatile tool to study chromatin 3D organization.

Authors: Esposito, Andrea Bianco, Simona Fiorillo, Luca et al.

Source: Biochemical Society Transactions. Aug2021, Vol. 49 Issue 4, p1675-1684. 10p.

Inference of chromosome 3D structures from GAM data by a physics computational approach.

Authors: Fiorillo, Luca Bianco, Simona Chiariello, Andrea M. et al.

Source: Methods. Oct2020, Vol. 181, p70-79. 10p.

Emergent domain segregation in self-interacting polymers explains chromosome 3D conformations in single human cells.

Authors: Conte M Bianco S Guha S et al.

Source: Physical review. E [Phys Rev E] 2026 May; Vol. 113 (5-1), pp. 054416.

Publication Type: Journal Article

Journal Info: Publisher: American Physical Society Country of Publication: United States NLM ID: 101676019 Publication Model: Print Cited Medium: Internet ISSN: 2470-0053 (Electronic) Linking ISSN: 24700045 NLM ISO Abbreviation: Phys Rev E Subsets: MEDLINE

An integrated view of the structure and function of the human 4D nucleome.

Authors: Dekker J Oksuz BA Zhang Y et al.

Source: Nature [Nature] 2026 Jan; Vol. 649 (8097), pp. 759-776. Date of Electronic Publication: 2025 Dec 17.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Functional architecture of cardiac TF regulatory landscapes in control of mammalian heart development.

Authors: Roland V Tüchler J Esposito A et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Dec 22. Date of Electronic Publication: 2025 Dec 22.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Visualizing chromatin communication in living cells through Oligo-LiveFISH.

Authors: Conte M Nicodemi M

Source: Cell reports methods [Cell Rep Methods] 2025 Jun 16; Vol. 5 (6), pp. 101079. Date of Electronic Publication: 2025 Jun 09.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 9918227360606676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2667-2375 (Electronic) Linking ISSN: 26672375 NLM ISO Abbreviation: Cell Rep Methods Subsets: MEDLINE

Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding.

Authors: Conte M Irani E Chiariello AM et al.

Source: Nature communications [Nat Commun] 2022 Jul 13; Vol. 13 (1), pp. 4070. Date of Electronic Publication: 2022 Jul 13.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE