Search Results - "Cosma MP"

Deep learning in chromatin organization: from super-resolution microscopy to clinical applications.

Authors: Rotkevich M Viana C Neguembor MV et al.

Source: Cellular and molecular life sciences : CMLS [Cell Mol Life Sci] 2025 Aug 29; Vol. 82 (1), pp. 323. Date of Electronic Publication: 2025 Aug 29.

Publication Type: Journal Article; Review

Journal Info: Publisher: Springer Country of Publication: Switzerland NLM ID: 9705402 Publication Model: Electronic Cited Medium: Internet ISSN: 1420-9071 (Electronic) Linking ISSN: 1420682X NLM ISO Abbreviation: Cell Mol Life Sci Subsets: MEDLINE

Herpes simplex virus type 1 reshapes host chromatin architecture via transcription machinery hijacking.

Authors: González-Almela E Castells-Garcia A Le Dily F et al.

Source: Nature communications [Nat Commun] 2025 Jun 19; Vol. 16 (1), pp. 5313. Date of Electronic Publication: 2025 Jun 19.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

A framework for the exploration of subcellular compartmentalization of RNA-binding proteins.

Authors: Guo X Hu J Kanwal S et al.

Source: Nature communications [Nat Commun] 2026 Apr 21; Vol. 17 (1). Date of Electronic Publication: 2026 Apr 21.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

SMARCAD1 and TOPBP1 contribute to heterochromatin maintenance at the transition from the 2C-like to the pluripotent state.

Authors: Sebastian-Perez R Nakagawa S Tu X et al.

Source: ELife [Elife] 2025 Feb 19; Vol. 12. Date of Electronic Publication: 2025 Feb 19.

Publication Type: Journal Article

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

Nuclear localization of MTHFD2 is required for correct mitosis progression.

Authors: Pardo-Lorente N Gkanogiannis A Cozzuto L et al.

Source: Nature communications [Nat Commun] 2024 Nov 12; Vol. 15 (1), pp. 9529. Date of Electronic Publication: 2024 Nov 12.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Cell Fusion in Reprogramming and Regeneration.

Authors: Angles MC Byrne EM Cosma MP

Source: Advances in experimental medicine and biology [Adv Exp Med Biol] 2026; Vol. 1509, pp. 179-216.

Publication Type: Journal Article; Review

Journal Info: Publisher: Kluwer Academic/Plenum Publishers Country of Publication: United States NLM ID: 0121103 Publication Model: Print Cited Medium: Print ISSN: 0065-2598 (Print) Linking ISSN: 00652598 NLM ISO Abbreviation: Adv Exp Med Biol Subsets: MEDLINE

The relationship between nanoscale genome organization and gene expression in mouse embryonic stem cells during pluripotency transition.

Authors: Garate X Gómez-García PA Merino MF et al.

Source: Nucleic acids research [Nucleic Acids Res] 2024 Aug 12; Vol. 52 (14), pp. 8146-8164.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Active transcription and epigenetic reactions synergistically regulate meso-scale genomic organization.

Authors: Kant A Guo Z Vinayak V et al.

Source: Nature communications [Nat Commun] 2024 May 21; Vol. 15 (1), pp. 4338. Date of Electronic Publication: 2024 May 21.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

The diffraction limit of light taken by storm.

Authors: Cosma MP; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, ICREA, Universitat Pompeu Fabra (UPF), Barcelona, Spain. pia.cosma@crg.es.

Source: Nature reviews. Molecular cell biology [Nat Rev Mol Cell Biol] 2025 Jul; Vol. 26 (7), pp. 498.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 100962782 Publication Model: Print Cited Medium: Internet ISSN: 1471-0080 (Electronic) Linking ISSN: 14710072 NLM ISO Abbreviation: Nat Rev Mol Cell Biol Subsets: MEDLINE; In Process

Super-resolving chromatin in its own terms: Recent approaches to portray genomic organization.

Authors: Merino MF Cosma MP Neguembor MV

Source: Current opinion in structural biology [Curr Opin Struct Biol] 2025 Jun; Vol. 92, pp. 103021. Date of Electronic Publication: 2025 Mar 03.

Publication Type: Journal Article; Review

Journal Info: Publisher: Elsevier Science Country of Publication: England NLM ID: 9107784 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-033X (Electronic) Linking ISSN: 0959440X NLM ISO Abbreviation: Curr Opin Struct Biol Subsets: MEDLINE

A highly conserved neuronal microexon in DAAM1 controls actin dynamics, RHOA/ROCK signaling, and memory formation.

Authors: Poliński P Miret Cuesta M Zamora-Moratalla A et al.

Source: Nature communications [Nat Commun] 2025 May 06; Vol. 16 (1), pp. 4210. Date of Electronic Publication: 2025 May 06.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Cohesin-independent STAG proteins interact with RNA and R-loops and promote complex loading.

Authors: Porter H Li Y Neguembor MV et al.

Source: ELife [Elife] 2023 Apr 03; Vol. 12. Date of Electronic Publication: 2023 Apr 03.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

The Wnt/TCF7L1 transcriptional repressor axis drives primitive endoderm formation by antagonizing naive and formative pluripotency.

Authors: Athanasouli P Balli M De Jaime-Soguero A et al.

Source: Nature communications [Nat Commun] 2023 Mar 03; Vol. 14 (1), pp. 1210. Date of Electronic Publication: 2023 Mar 03.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Super resolution microscopy reveals how elongating RNA polymerase II and nascent RNA interact with nucleosome clutches.

Authors: Castells-Garcia A Ed-Daoui I González-Almela E et al.

Source: Nucleic acids research [Nucleic Acids Res] 2022 Jan 11; Vol. 50 (1), pp. 175-190.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Dissecting gene activation and chromatin remodeling dynamics in single human cells undergoing reprogramming.

Authors: Martinez-Sarmiento JA Cosma MP Lakadamyali M

Source: Cell reports [Cell Rep] 2024 May 28; Vol. 43 (5), pp. 114170. Date of Electronic Publication: 2024 May 02.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

The Wnt-dependent master regulator NKX1-2 controls mouse pre-implantation development.

Authors: Nakagawa S Carnevali D Tan X et al.

Source: Stem cell reports [Stem Cell Reports] 2024 May 14; Vol. 19 (5), pp. 689-709. Date of Electronic Publication: 2024 May 02.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101611300 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2213-6711 (Electronic) Linking ISSN: 22136711 NLM ISO Abbreviation: Stem Cell Reports Subsets: MEDLINE

A deep learning method that identifies cellular heterogeneity using nanoscale nuclear features.

Authors: Carnevali D Zhong L González-Almela E et al.

Source: Nature machine intelligence [Nat Mach Intell] 2024; Vol. 6 (9), pp. 1021-1033. Date of Electronic Publication: 2024 Aug 27.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101740243 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2522-5839 (Electronic) Linking ISSN: 25225839 NLM ISO Abbreviation: Nat Mach Intell Subsets: PubMed not MEDLINE

Super-resolution microscopy reveals how histone tail acetylation affects DNA compaction within nucleosomes in vivo.

Authors: Otterstrom J Castells-Garcia A Vicario C et al.

Source: Nucleic acids research [Nucleic Acids Res] 2019 Sep 19; Vol. 47 (16), pp. 8470-8484.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

The magic of unraveling genome architecture and function.

Authors: Cosma MP Neguembor MV

Source: Cell reports [Cell Rep] 2023 Apr 25; Vol. 42 (4), pp. 112361. Date of Electronic Publication: 2023 Apr 13.

Publication Type: Journal Article; Review; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

Women's contribution in understanding how topoisomerases, supercoiling, and transcription control genome organization.

Authors: Martin L Neguembor MV Cosma MP

Source: Frontiers in molecular biosciences [Front Mol Biosci] 2023 Mar 27; Vol. 10, pp. 1155825. Date of Electronic Publication: 2023 Mar 27 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Media S.A Country of Publication: Switzerland NLM ID: 101653173 Publication Model: eCollection Cited Medium: Print ISSN: 2296-889X (Print) Linking ISSN: 2296889X NLM ISO Abbreviation: Front Mol Biosci Subsets: PubMed not MEDLINE