Search Results - "Del Castillo JS"

Author Correction: Learning single-cell perturbation responses using neural optimal transport.

Authors: Bunne C Stark SG Gut G et al.

Source: Nature methods [Nat Methods] 2023 Nov; Vol. 20 (11), pp. 1830.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE; PubMed not MEDLINE

scMagnifier: Resolving fine-grained cell subtypes via GRN-informed perturbations and consensus clustering.

Authors: He, Zhenhui Kangning, Dong

Source: PLoS Computational Biology. 6/18/2026, Vol. 22 Issue 6, p1-22. 22p.

What will be the future of computational biology for macromolecules in the era of AI?

Authors: Elofsson, Arne Ben-Tal, Nir

Source: PLoS Computational Biology. 7/8/2026, Vol. 22 Issue 7, p1-7. 7p.

A mixture of attention experts-embedded flow-based generative model to create synthetic cells in single-cell RNA-Seq datasets.

Authors: Turgut Ögme, Sultan Sevgi Aydin, Nizamettin Kurt, Zeyneb

Source: PLoS Computational Biology. 10/6/2025, Vol. 21 Issue 10, p1-25. 25p.

BuDDI: Bulk Deconvolution with Domain Invariance to predict cell-type-specific perturbations from bulk.

Authors: Davidson, Natalie R. Zhang, Fan Greene, Casey S.

Source: PLoS Computational Biology. 1/17/2025, Vol. 21 Issue 1, p1-22. 22p.

Human retinal organoid model of disease-relevant photoreceptor cell death amenable to drug screening.

Authors: Parween S Saviola AJ Howell AC et al.

Source: Cell death & disease [Cell Death Dis] 2026 Apr 13; Vol. 17 (1). Date of Electronic Publication: 2026 Apr 13.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101524092 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-4889 (Electronic) NLM ISO Abbreviation: Cell Death Dis Subsets: MEDLINE

Iterative Indirect Immunofluorescence Imaging (4i) on Adherent Cells and Tissue Sections.

Authors: Kramer BA Del Castillo JS Pelkmans L et al.

Source: Bio-protocol [Bio Protoc] 2023 Jul 05; Vol. 13 (13), pp. e4712. Date of Electronic Publication: 2023 Jul 05 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Bio-protocol LLC Country of Publication: United States NLM ID: 101635102 Publication Model: eCollection Cited Medium: Internet ISSN: 2331-8325 (Electronic) Linking ISSN: 23318325 NLM ISO Abbreviation: Bio Protoc Subsets: PubMed not MEDLINE

scArchon: a scalable benchmarking framework for assessing single-cell perturbation models.

Authors: Radig J Droit R Doncevic D et al.

Source: Genome biology [Genome Biol] 2026 May 12; Vol. 27 (1). Date of Electronic Publication: 2026 May 12.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Towards understanding cancer dormancy over strategic hitching up mechanisms to technologies.

Authors: Yang, Sumin Seo, Jieun Choi, Jeonghyeon et al.

Source: Molecular Cancer. 2/14/2025, Vol. 24 Issue 1, p1-25. 25p.

A sequence knowledge-guided deep learning method for single-cell multi-omics translation.

Authors: Zhao M Li J Jiang Y et al.

Source: Genome biology [Genome Biol] 2026 Apr 14; Vol. 27 (1). Date of Electronic Publication: 2026 Apr 14.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Single-cell sequencing in diabetic retinopathy: progress and prospects.

Authors: Yang, Tianshu Zhang, Ningzhi Yang, Ning

Source: Journal of Translational Medicine. 1/13/2025, Vol. 23 Issue 1, p1-13. 13p.

Inertial effect of cell state velocity on the quiescence-proliferation fate decision.

Authors: Venkatachalapathy, Harish Brzakala, Cole Batchelor, Eric et al.

Source: NPJ Systems Biology & Applications. 10/2/2024, Vol. 10 Issue 1, p1-14. 14p.

Human pluripotent stem cell-derived retinal ganglion cells: advances in differentiation and translational applications.

Authors: Ma JYW Daniszewski M Pébay A

Source: Molecular medicine (Cambridge, Mass.) [Mol Med] 2025 Dec 08; Vol. 32 (1), pp. 24. Date of Electronic Publication: 2025 Dec 08.

Publication Type: Journal Article; Review

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 9501023 Publication Model: Electronic Cited Medium: Internet ISSN: 1528-3658 (Electronic) Linking ISSN: 10761551 NLM ISO Abbreviation: Mol Med Subsets: MEDLINE

AI approaches for the discovery and validation of drug targets.

Authors: Wenteler, Aaron Cabrera, Claudia P. Wei Wei et al.

Source: Cambridge Prisms: Precision Medicine. 2024, Vol. 2, p1-12. 12p.

Human brain organoid: trends, evolution, and remaining challenges.

Authors: Li M Yuan Y Hou Z et al.

Source: Neural regeneration research [Neural Regen Res] 2024 Nov 01; Vol. 19 (11), pp. 2387-2399. Date of Electronic Publication: 2023 Dec 15.

Publication Type: Journal Article

Journal Info: Publisher: Wolters Kluwer Health, Medknow Country of Publication: India NLM ID: 101316351 Publication Model: Print-Electronic Cited Medium: Print ISSN: 1673-5374 (Print) Linking ISSN: 16735374 NLM ISO Abbreviation: Neural Regen Res Subsets: PubMed not MEDLINE

Single-cell landscape of innate and acquired drug resistance in acute myeloid leukemia.

Authors: Wegmann R Bonilla X Casanova R et al.

Corporate Authors: Wegmann R Bonilla X Casanova R et al.

Source: Nature communications [Nat Commun] 2024 Oct 30; Vol. 15 (1), pp. 9402. Date of Electronic Publication: 2024 Oct 30.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Characterization of ROMK cellular heterogeneity along the mouse kidney thick ascending limb.

Authors: Keller C Santos RR van Megen WH et al.

Source: Pflugers Archiv : European journal of physiology [Pflugers Arch] 2025 Jun; Vol. 477 (6), pp. 841-856. Date of Electronic Publication: 2025 May 13.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 0154720 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-2013 (Electronic) Linking ISSN: 00316768 NLM ISO Abbreviation: Pflugers Arch Subsets: MEDLINE

scStateDynamics: deciphering the drug-responsive tumor cell state dynamics by modeling single-cell level expression changes.

Authors: Guo W Li X Wang D et al.

Source: Genome biology [Genome Biol] 2024 Nov 21; Vol. 25 (1), pp. 297. Date of Electronic Publication: 2024 Nov 21.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

A genome-wide scan of non-coding RNAs and enhancers for refractive error and myopia.

Authors: Tedja MS Swierkowska-Janc J Enthoven CA et al.

Corporate Authors: Tedja MS Swierkowska-Janc J Enthoven CA et al.

Source: Human genetics [Hum Genet] 2025 Jan; Vol. 144 (1), pp. 67-91. Date of Electronic Publication: 2025 Jan 08.

Publication Type: Journal Article

Journal Info: Publisher: Springer Verlag Country of Publication: Germany NLM ID: 7613873 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-1203 (Electronic) Linking ISSN: 03406717 NLM ISO Abbreviation: Hum Genet Subsets: MEDLINE

Decoding the crossroads of aging and cancer through single-cell analysis: Implications for precision oncology.

Authors: Li D Yu Q Shao F et al.

Source: International journal of cancer [Int J Cancer] 2025 Sep 01; Vol. 157 (5), pp. 807-818. Date of Electronic Publication: 2025 Apr 23.

Publication Type: Journal Article; Review

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 0042124 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0215 (Electronic) Linking ISSN: 00207136 NLM ISO Abbreviation: Int J Cancer Subsets: MEDLINE