Search Results - "Dodero-Rojas E"

On twin peak quasi-periodic oscillations resulting from the interaction between discoseismic modes and turbulence in accretion discs around black holes.

Authors: Ortega-Rodríguez, M Solís-Sánchez, H Álvarez-García, L et al.

Source: Monthly Notices of the Royal Astronomical Society; 2/21/2020, Vol. 492 Issue 2, p1755-1760, 6p

Epigenetics is all you need: A transformer to decode chromatin structural compartments from the epigenome.

Authors: Dodero-Rojas E Mendieta A Fehlis Y et al.

Source: PLoS computational biology [PLoS Comput Biol] 2025 Dec 03; Vol. 21 (12), pp. e1012326. Date of Electronic Publication: 2025 Dec 03 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Comprehensive profiling of activity and specificity of RNA-guided transposons reveals opportunities to engineer improved variants.

Authors: Park SG Park JU Dodero-Rojas E et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Sep 23; Vol. 53 (18).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

A data-driven chromatin model reveals spatial and dynamic features of genome organization.

Authors: Oliveira Junior AB Mello MF Oliveira RJ et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2026 Jan 27; Vol. 123 (4), pp. e2530583123. Date of Electronic Publication: 2026 Jan 23.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

Structure and inhibition of SARS-CoV-2 spike refolding in membranes.

Authors: Grunst MW Qin Z Dodero-Rojas E et al.

Source: Science (New York, N.Y.) [Science] 2024 Aug 16; Vol. 385 (6710), pp. 757-765. Date of Electronic Publication: 2024 Aug 15.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

Conformational ligand-directed targeting of calcium-dependent receptors in acute trauma.

Authors: Pasqualini R Markosian C Staquicini DI et al.

Source: Med (New York, N.Y.) [Med] 2025 Jul 11; Vol. 6 (7), pp. 100638. Date of Electronic Publication: 2025 Jul 02.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Intramural

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101769215 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-6340 (Electronic) Linking ISSN: 26666340 NLM ISO Abbreviation: Med Subsets: MEDLINE

Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection.

Authors: Markosian C Staquicini DI Dogra P et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2022 May 03; Vol. 39 (5).

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

SMOG 2 and OpenSMOG: Extending the limits of structure-based models.

Authors: de Oliveira AB Jr Contessoto VG Hassan A et al.

Source: Protein science : a publication of the Protein Society [Protein Sci] 2022 Jan; Vol. 31 (1), pp. 158-172. Date of Electronic Publication: 2021 Nov 01.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome.

Authors: Contessoto VG Cheng RR Hajitaheri A et al.

Source: Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D172-D182.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

PyMEGABASE: Predicting Cell-Type-Specific Structural Annotations of Chromosomes Using the Epigenome.

Authors: Dodero-Rojas E Mello MF Brahmachari S et al.

Source: Journal of molecular biology [J Mol Biol] 2023 Aug 01; Vol. 435 (15), pp. 168180. Date of Electronic Publication: 2023 Jun 09.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE

Modeling Chikungunya control strategies and Mayaro potential outbreak in the city of Rio de Janeiro.

Authors: Dodero-Rojas E Ferreira LG Leite VBP et al.

Source: PloS one [PLoS One] 2020 Jan 28; Vol. 15 (1), pp. e0222900. Date of Electronic Publication: 2020 Jan 28 (Print Publication: 2020).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Sterically confined rearrangements of SARS-CoV-2 Spike protein control cell invasion.

Authors: Dodero-Rojas E Onuchic JN Whitford PC

Source: ELife [Elife] 2021 Aug 31; Vol. 10. Date of Electronic Publication: 2021 Aug 31.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools.

Authors: Markosian C Staquicini DI Dogra P et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2021 Aug 30. Date of Electronic Publication: 2021 Aug 30.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain.

Authors: Staquicini DI Tang FHF Markosian C et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2021 Jul 27; Vol. 118 (30).

Publication Type: Evaluation Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE