Search Results - "Dodero-Rojas E"

Epigenetics is all you need: A transformer to decode chromatin structural compartments from the epigenome.

Authors: Dodero-Rojas, Esteban Mendieta, Angel Fehlis, Yao et al.

Source: PLoS Computational Biology. 12/3/2025, Vol. 21 Issue 12, p1-17. 17p.

The F1148 hydrophobic lock: A critical determinant of SARS-CoV-2 spike protein-mediated membrane fusion via the 3H/CH cavity.

Authors: Lei, Fuzhi Lei, Yahan Yuan, Zhenghong et al.

Source: PLoS Pathogens. 9/19/2025, Vol. 21 Issue 9, p1-26. 26p.

A data-driven chromatin model reveals spatial and dynamic features of genome organization.

Authors: Oliveira Junior AB Mello MF Oliveira RJ et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2026 Jan 27; Vol. 123 (4), pp. e2530583123. Date of Electronic Publication: 2026 Jan 23.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

Structures of two lyssavirus glycoproteins trapped in pre- and post-fusion states and the implications on the spatial-temporal conformational transition along with pH-decrease.

Authors: Yang, Fanli Lin, Sheng Yuan, Xin et al.

Source: PLoS Pathogens. 2/19/2025, Vol. 21 Issue 2, p1-21. 21p.

Entry Inhibitors of SARS-CoV-2 Targeting the Transmembrane Domain of the Spike Protein.

Authors: Lyles, Kristin V. Stone, Shannon Singh, Priti et al.

Source: Viruses (1999-4915). Jul2025, Vol. 17 Issue 7, p989. 17p.

SARS-CoV-2 Omicron variations reveal mechanisms controlling cell entry dynamics and antibody neutralization.

Authors: Qing, Enya Salgado, Julisa Wilcox, Alexandria et al.

Source: PLoS Pathogens. 12/2/2024, Vol. 20 Issue 12, p1-24. 24p.

Broad Neutralizing Antibodies Against SARS-CoV-2: Current Progress and Engineering Strategies.

Authors: Jia, Tianrong Huang, Zehong Xia, Ningshao et al.

Source: Viruses (1999-4915). Jun2026, Vol. 18 Issue 6, p642. 38p.

Probing quantum corrected Kazakov–Solodukhin black holes through QPOs and thin accretion disks.

Authors: Murodov, Sardor Egamberdiev, Islom Umarov, Otabek et al.

Source: European Physical Journal C -- Particles & Fields. May2026, Vol. 86 Issue 5, p1-14. 14p.

Structural basis and mode of action for two broadly neutralizing nanobodies targeting the highly conserved spike stem-helix of sarbecoviruses including SARS-CoV-2 and its variants.

Authors: Guo, Liyan Chen, Zimin Lin, Sheng et al.

Source: PLoS Pathogens. 4/11/2025, Vol. 21 Issue 4, p1-27. 27p.

Capture of fusion-intermediate conformations of SARS-CoV-2 spike requires receptor binding and cleavage at either the S1/S2 or S2' site.

Authors: Lusvarghi, Sabrina Vassell, Russell Williams, Brittany et al.

Source: PLoS Pathogens. 4/8/2025, Vol. 21 Issue 4, p1-23. 23p.

Genetically Engineered Filamentous Bacteriophages Displaying TGF-β1 Promote Angiogenesis in 3D Microenvironments.

Authors: Baek, In-Hyuk Helms, Volkhard Kim, Youngjun

Source: Journal of Functional Biomaterials; Nov2024, Vol. 15 Issue 11, p314, 15p

A Dual-Targeting Peptide Inhibitor Simultaneously Blocking Viral Attachment and Membrane Fusion for Broad-Spectrum Inhibition of SARS-CoV-2.

Authors: Bi, Wenwen Zhu, Tao Xu, Yawen et al.

Source: International Journal of Molecular Sciences. Jun2025, Vol. 26 Issue 12, p5729. 13p.

Adaptive truncation of the S gene in IBV during chicken embryo passaging plays a crucial role in its attenuation.

Authors: Liang, Rong Liu, Kangchengyin Li, Yingfei et al.

Source: PLoS Pathogens. 7/30/2024, Vol. 20 Issue 7, p1-31. 31p.

Viro3D: a comprehensive database of virus protein structure predictions.

Authors: Litvin, Ulad Lytras, Spyros Jack, Alexander et al.

Source: Molecular Systems Biology. Nov2025, Vol. 21 Issue 11, p1599-1617. 19p.

Effects of Temperature Dependence in Mosquito Mortality on Simulated Chikungunya Virus Transmission.

Authors: Lord, Cynthia C.¹ (AUTHOR)

Source: Viruses (1999-4915). Nov2025, Vol. 17 Issue 11, p1486. 12p.

Effects of N-glycan modifications on spike expression, virus infectivity, and neutralization sensitivity in ancestral compared to Omicron SARS-CoV-2 variants.

Authors: Lusvarghi, Sabrina Stauft, Charles B. Vassell, Russell et al.

Source: PLoS Pathogens. 11/9/2023, Vol. 19 Issue 11, p1-22. 22p.

β-enaminoester derivatives exhibit promising in vitro and in silico antiviral potential against Mayaro virus.

Authors: da Rocha, Natasha Cristina Amorim, Leonardo dos Santos Corrêa Won-Held Rabelo, Vitor et al.

Source: Archives of Microbiology. Oct2024, Vol. 206 Issue 10, p1-14. 14p.

PLGA microparticle formulations for tunable delivery of a nano-engineered filamentous bacteriophage-based vaccine: in vitro and in silico-supported approach.

Authors: Jamaledin, Rezvan Sartorius, Rossella Di Natale, Concetta et al.

Source: Journal of Nanostructure in Chemistry. Oct2024, Vol. 14 Issue 5, p307-322. 16p.

Novel SARS-COV2 poly epitope phage-based candidate vaccine and its immunogenicity.

Authors: Hasani, Sharareh Mohammad Behdani, Mahdi Amirkhani, Zohreh et al.

Source: Research in Pharmaceutical Sciences. Oct2024, Vol. 19 Issue 5, p573-590. 18p.

PyMEGABASE: Predicting Cell-Type-Specific Structural Annotations of Chromosomes Using the Epigenome.

Authors: Dodero-Rojas E Mello MF Brahmachari S et al.

Source: Journal of molecular biology [J Mol Biol] 2023 Aug 01; Vol. 435 (15), pp. 168180. Date of Electronic Publication: 2023 Jun 09.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE