Search Results - "Epigenomics"

DeepMethylation: A deep learning framework for tissue-specific DNA methylation prediction and functional variant annotation.

Authors: Li W Yu S Cheng Y et al.

Source: PLoS computational biology [PLoS Comput Biol] 2026 Jul 01; Vol. 22 (7), pp. e1014476. Date of Electronic Publication: 2026 Jul 01 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Integrated flexible DNA methylation-chromatin segmentation modeling enhances epigenomic state annotation.

Authors: Aggarwal N Schmitz JE Laufer L et al.

Source: Nucleic acids research [Nucleic Acids Res] 2026 Jun 08; Vol. 54 (11).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

The Evolving Landscape of Clinical Aging Clocks: From Epigenetic to Multi-Omics Integration.

Authors: Liu L Lai Y Tian C et al.

Source: Aging cell [Aging Cell] 2026 Jun; Vol. 25 (6), pp. e70579.

Publication Type: Journal Article; Review

Journal Info: Publisher: Wiley-Blackwell Country of Publication: England NLM ID: 101130839 Publication Model: Print Cited Medium: Internet ISSN: 1474-9726 (Electronic) Linking ISSN: 14749718 NLM ISO Abbreviation: Aging Cell Subsets: MEDLINE

ChromCall: assigning chromatin status to defined genomic regions using epigenomic profiling data.

Authors: Wang B Al-Jabri M Gk U et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Jun 01; Vol. 42 (6).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

CpGene: a web application for epigenetic signature identification from DNA methylation arrays.

Authors: Lazaros K Logotheti S Logothetis C et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 May 03; Vol. 42 (5).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Epigenomic and Metabolic Interplay in the Development of Metastatic Brain Tumors.

Authors: Rastogi V Verma D Verma S et al.

Source: Oncology research [Oncol Res] 2026 Feb 24; Vol. 34 (3), pp. 7. Date of Electronic Publication: 2026 Feb 24 (Print Publication: 2026).

Publication Type: Journal Article; Review

Journal Info: Publisher: Tech Science Press Country of Publication: United States NLM ID: 9208097 Publication Model: eCollection Cited Medium: Internet ISSN: 1555-3906 (Electronic) Linking ISSN: 09650407 NLM ISO Abbreviation: Oncol Res Subsets: MEDLINE

Learning a pairwise epigenomic and transcription factor binding association score across the human genome.

Authors: Kwon SB Ernst J

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Feb 03; Vol. 42 (2).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

From Genomic and Epigenomic Maps to Medicines in Adult T-Cell Leukemia/Lymphoma.

Authors: Suzuki K Yamagishi M

Source: Cancer science [Cancer Sci] 2026 Feb; Vol. 117 (2), pp. 289-296. Date of Electronic Publication: 2025 Nov 15.

Publication Type: Journal Article; Review

Journal Info: Publisher: Wiley Publishing on behalf of the Japanese Cancer Association Country of Publication: England NLM ID: 101168776 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1349-7006 (Electronic) Linking ISSN: 13479032 NLM ISO Abbreviation: Cancer Sci Subsets: MEDLINE

Epigenomics-guided precision oncology: Chromatin variants in prostate tumor evolution.

Authors: Furlano K Keshavarzian T Biernath N et al.

Source: International journal of cancer [Int J Cancer] 2026 Jan 15; Vol. 158 (2), pp. 314-332. Date of Electronic Publication: 2025 Jan 23.

Publication Type: Journal Article; Review

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 0042124 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0215 (Electronic) Linking ISSN: 00207136 NLM ISO Abbreviation: Int J Cancer Subsets: MEDLINE

A hitchhiker's guide to single-cell epigenomics: Methods and applications for cancer research.

Authors: Moreno-Gonzalez M Sierra I Kind J

Source: International journal of cancer [Int J Cancer] 2026 Jan 15; Vol. 158 (2), pp. 291-304. Date of Electronic Publication: 2024 Dec 22.

Publication Type: Journal Article; Review

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 0042124 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0215 (Electronic) Linking ISSN: 00207136 NLM ISO Abbreviation: Int J Cancer Subsets: MEDLINE

Phased epigenomics and methylation inheritance in a historical Vitis vinifera hybrid.

Authors: Cochetel N Vondras AM Figueroa-Balderas R et al.

Source: Genome biology [Genome Biol] 2025 Nov 17; Vol. 26 (1), pp. 392. Date of Electronic Publication: 2025 Nov 17.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

CMAtlas: a comprehensive DNA methylation atlas for exploring epigenetic alterations in 34 human cancer types.

Authors: Liu M Jiang L Zhang L et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Jan 03; Vol. 42 (2).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Towards personalized epigenomics: learning shared chromatin landscapes and joint de-noising of histone modification assays.

Authors: Narendra T Visonà G Cardona CJ et al.

Source: NAR genomics and bioinformatics [NAR Genom Bioinform] 2025 Dec 19; Vol. 7 (4), pp. lqaf188. Date of Electronic Publication: 2025 Dec 19 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: MEDLINE

Reconstructing epigenomic dynamics through a single-cell multi-epigenome data integration framework.

Authors: Fujii T Tomimatsu K Kato M et al.

Source: Nature communications [Nat Commun] 2025 Dec 17; Vol. 16 (1), pp. 11006. Date of Electronic Publication: 2025 Dec 17.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Epigenetics is all you need: A transformer to decode chromatin structural compartments from the epigenome.

Authors: Dodero-Rojas E Mendieta A Fehlis Y et al.

Source: PLoS computational biology [PLoS Comput Biol] 2025 Dec 03; Vol. 21 (12), pp. e1012326. Date of Electronic Publication: 2025 Dec 03 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Towards molecular evolutionary epigenomics with an expanded nucleotide code involving methylated bases.

Authors: Yoshida S Uchiyama I Fukuyo M et al.

Source: DNA research : an international journal for rapid publication of reports on genes and genomes [DNA Res] 2025 Dec 01; Vol. 32 (6).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9423827 Publication Model: Print Cited Medium: Internet ISSN: 1756-1663 (Electronic) Linking ISSN: 13402838 NLM ISO Abbreviation: DNA Res Subsets: MEDLINE

What Are the Most Ethically Salient Implications of Epigenetic Age Testing?

Authors: Hauskeller M Shore L

Source: AMA journal of ethics [AMA J Ethics] 2025 Dec 01; Vol. 27 (12), pp. E828-833. Date of Electronic Publication: 2025 Dec 01.

Publication Type: Journal Article

Journal Info: Publisher: American Medical Association Country of Publication: United States NLM ID: 101649265 Publication Model: Electronic Cited Medium: Internet ISSN: 2376-6980 (Electronic) Linking ISSN: 23766980 NLM ISO Abbreviation: AMA J Ethics Subsets: MEDLINE

Using epigenetic clocks in environmental epigenetics: recommendations for estimating biological aging in perinatal and pediatric samples.

Authors: England-Mason G; Department of Pediatrics, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada.; Owerko Centre, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Alberta, Canada.

Source: Essays in biochemistry [Essays Biochem] 2025 Nov 26; Vol. 69 (3), pp. 249-264.

Publication Type: Journal Article; Review

Journal Info: Publisher: Portland Press on behalf of the Biochemical Society Country of Publication: England NLM ID: 0043306 Publication Model: Print Cited Medium: Internet ISSN: 1744-1358 (Electronic) Linking ISSN: 00711365 NLM ISO Abbreviation: Essays Biochem Subsets: MEDLINE

DNA shape and epigenomics distinguish the mechanistic origin of human genomic structural variations.

Authors: Boev NB Gerstein MB Kumar S

Source: Nucleic acids research [Nucleic Acids Res] 2025 Nov 26; Vol. 53 (22).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

3-D biomechanics and epigenomics reveal atypical fibroblast responses in cardiometabolic disease.

Authors: Ibrahim SY Holdiness R Thadisena A et al.

Source: American journal of physiology. Heart and circulatory physiology [Am J Physiol Heart Circ Physiol] 2025 Nov 01; Vol. 329 (5), pp. H1267-H1277. Date of Electronic Publication: 2025 Oct 10.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Physiological Society Country of Publication: United States NLM ID: 100901228 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1522-1539 (Electronic) Linking ISSN: 03636135 NLM ISO Abbreviation: Am J Physiol Heart Circ Physiol Subsets: MEDLINE