Search Results - "Fourment, Mathieu"

torchtree: Flexible Phylogenetic Model Development and Inference Using PyTorch.

Authors: Fourment, Mathieu Macaulay, Matthew Swanepoel, Christiaan J et al.

Source: Systematic Biology. Jan2026, Vol. 75 Issue 1, p39-51. 13p.

Subjects: Phylogenetic models, Variational approach (Mathematics), Bayesian analysis, Statistical models, Automatic differentiation, Markov chain Monte Carlo

Differentiable phylogenetics via hyperbolic embeddings with Dodonaphy.

Authors: Macaulay, Matthew Fourment, Mathieu

Source: Bioinformatics Advances. 2024, Vol. 4 Issue 1, p1-9. 9p.

19 Dubious Ways to Compute the Marginal Likelihood of a Phylogenetic Tree Topology.

Authors: Fourment, Mathieu Magee, Andrew F Whidden, Chris et al.

Source: Systematic Biology. Mar2020, Vol. 69 Issue 2, p209-220. 12p.

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Effective Online Bayesian Phylogenetics via Sequential Monte Carlo with Guided Proposals.

Authors: FOURMENT, MATHIEU CLAYWELL, BRIAN C. VU DINH et al.

Source: Systematic Biology. May2018, Vol. 67 Issue 3, p490-502. 13p.

Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation.

Authors: Fourment, Mathieu Swanepoel, Christiaan J Galloway, Jared G et al.

Source: Genome Biology & Evolution; Jun2023, Vol. 15 Issue 6, p1-7, 7p

The impact of migratory flyways on the spread of avian influenza virus in North America.

Authors: Fourment, Mathieu Darling, Aaron E. Holmes, Edward C.

Source: BMC Evolutionary Biology. 5/25/2017, Vol. 17, p1-12. 12p.

Seqotron: a user-friendly sequence editor for Mac OS X.

Authors: Fourment, Mathieu Holmes, Edward C.

Source: BMC Research Notes. 2/17/2016, Vol. 9, p1-4. 4p. 2 Color Photographs, 1 Chart.

Avian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultry.

Authors: Fourment, Mathieu Holmes, Edward C.

Source: BMC Evolutionary Biology. 2015, Vol. 15 Issue 1, p1-6. 6p.

Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data.

Authors: Fourment, Mathieu Holmes, Edward C.

Source: BMC Evolutionary Biology. 2014, Vol. 14 Issue 1, p1-23. 23p.

Molecular Epidemiology of Clade 1 Influenza A Viruses (H5N1), Southern Indochina Peninsula, 2004-2007.

Authors: Buchy, Philippe Fourment, Mathieu Mardy, Sek et al.

Source: Emerging Infectious Diseases. Oct2009, Vol. 15 Issue 10, p1641-1644. 4p. 1 Diagram, 1 Map.

The VirusBanker database uses a Java program to allow flexible searching through Bunyaviridae sequences.

Authors: Fourment, Mathieu Gibbs, Mark J.

Source: BMC Bioinformatics. 2008, Vol. 9, Special section p1-4. 4p. 1 Diagram.

A comparison of common programming languages used in bioinformatics.

Authors: Fourment, Mathieu Gillings, Michael R.

Source: BMC Bioinformatics. 2008, Vol. 9, Special section p1-9. 9p. 1 Chart, 5 Graphs.

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Identification of a novel lineage of plasmids within phylogenetically diverse subclades of IncHI2-ST1 plasmids.

Authors: Roy Chowdhury, Piklu Fourment, Mathieu DeMaere, Matthew Z. et al.

Source: Plasmid. Mar2019, Vol. 102, p56-61. 6p.

Fidelity of hyperbolic space for Bayesian phylogenetic inference.

Authors: Macaulay, Matthew Darling, Aaron Fourment, Mathieu

Source: PLoS Computational Biology. 4/26/2023, Vol. 19 Issue 4, p1-20. 20p. 6 Graphs.

African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus.

Authors: DuvaI, Linda Fourment, Mathieu Nerrienet, Eric et al.

Source: Proceedings of the National Academy of Sciences of the United States of America. 6/8/2010, Vol. 107 Issue 23, p10561-10566. 6p.

Subjects: Malaria, Plasmodium falciparum, Chimpanzees, Apes, Veterinary protozoology, Diseases

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