Search Results - "Funnell T"

Damage and Misrepair Signatures: Compact Representations of Pan-cancer Mutational Processes.

Authors: Harrigan CF Campbell KR Morris Q et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Jun 01. Date of Electronic Publication: 2025 Jun 01.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

An inflammatory biomarker signature of response to CAR-T cell therapy in non-Hodgkin lymphoma.

Authors: Raj SS Fei T Fried S et al.

Source: Nature medicine [Nat Med] 2025 Apr; Vol. 31 (4), pp. 1183-1194. Date of Electronic Publication: 2025 Apr 01.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Company Country of Publication: United States NLM ID: 9502015 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-170X (Electronic) Linking ISSN: 10788956 NLM ISO Abbreviation: Nat Med Subsets: MEDLINE

Correlating High-dimensional longitudinal microbial features with time-varying outcomes with FLORAL.

Authors: Fei T Donovan V Funnell T et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Feb 19. Date of Electronic Publication: 2025 Feb 19.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Accurate determination of CRISPR-mediated gene fitness in transplantable tumours.

Authors: Eirew P O'Flanagan C Ting J et al.

Source: Nature communications [Nat Commun] 2022 Aug 04; Vol. 13 (1), pp. 4534. Date of Electronic Publication: 2022 Aug 04.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Scalable log-ratio lasso regression for enhanced microbial feature selection with FLORAL.

Authors: Fei T Funnell T Waters NR et al.

Source: Cell reports methods [Cell Rep Methods] 2024 Nov 18; Vol. 4 (11), pp. 100899. Date of Electronic Publication: 2024 Nov 07.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 9918227360606676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2667-2375 (Electronic) Linking ISSN: 26672375 NLM ISO Abbreviation: Cell Rep Methods Subsets: MEDLINE

Sugar-rich foods exacerbate antibiotic-induced microbiome injury.

Authors: Dai A Adintori PA Funnell T et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Oct 14. Date of Electronic Publication: 2024 Oct 14.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes.

Authors: Kim M Gorelick AN Vàzquez-García I et al.

Source: Nature genetics [Nat Genet] 2024 May; Vol. 56 (5), pp. 889-899. Date of Electronic Publication: 2024 May 13.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE

Enhanced Feature Selection for Microbiome Data using FLORAL: Scalable Log-ratio Lasso Regression.

Authors: Fei T Funnell T Waters NR et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Dec 18. Date of Electronic Publication: 2023 Dec 18.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models.

Authors: Funnell T Zhang AW Grewal D et al.

Source: PLoS computational biology [PLoS Comput Biol] 2019 Feb 22; Vol. 15 (2), pp. e1006799. Date of Electronic Publication: 2019 Feb 22 (Print Publication: 2019).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Pilot Trial of Homebound Hematopoietic Cell Transplantation.

Authors: Landau HJ Orlando E Rodriguez ES et al.

Source: Transplantation and cellular therapy [Transplant Cell Ther] 2022 Dec; Vol. 28 (12), pp. 832.e1-832.e7. Date of Electronic Publication: 2022 Sep 29.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 101774629 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-6367 (Electronic) Linking ISSN: 26666367 NLM ISO Abbreviation: Transplant Cell Ther Subsets: MEDLINE

Single-cell genomic variation induced by mutational processes in cancer.

Authors: Funnell T O'Flanagan CH Williams MJ et al.

Corporate Authors: Funnell T O'Flanagan CH Williams MJ et al.

Source: Nature [Nature] 2022 Dec; Vol. 612 (7938), pp. 106-115. Date of Electronic Publication: 2022 Oct 26.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Ovarian cancer mutational processes drive site-specific immune evasion.

Authors: Vázquez-García I Uhlitz F Ceglia N et al.

Source: Nature [Nature] 2022 Dec; Vol. 612 (7941), pp. 778-786. Date of Electronic Publication: 2022 Dec 14.

Publication Type: Journal Article; Research Support, U.S. Gov't, P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor.

Authors: Funnell T Tasaki S Oloumi A et al.

Source: Nature communications [Nat Commun] 2017 Feb 23; Vol. 8 (1), pp. 7. Date of Electronic Publication: 2017 Feb 23.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types.

Authors: Ding J McConechy MK Horlings HM et al.

Source: Nature communications [Nat Commun] 2015 Oct 05; Vol. 6, pp. 8554. Date of Electronic Publication: 2015 Oct 05.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Physiological roles of NAADP-mediated Ca2+ signaling.

Authors: Galione A Parrington J Funnell T

Source: Science China. Life sciences [Sci China Life Sci] 2011 Aug; Vol. 54 (8), pp. 725-32. Date of Electronic Publication: 2011 Jul 24.

Publication Type: Journal Article; Review

Journal Info: Publisher: Science China Press, co-published with Springer Country of Publication: China NLM ID: 101529880 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1869-1889 (Electronic) Linking ISSN: 16747305 NLM ISO Abbreviation: Sci China Life Sci Subsets: MEDLINE

Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer.

Authors: Zhang AW McPherson A Milne K et al.

Source: Cell [Cell] 2018 Jun 14; Vol. 173 (7), pp. 1755-1769.e22. Date of Electronic Publication: 2018 May 10.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE