Search Results - "GENE expression profiling"

Tool choice matters: Evaluating edgeR vs. DESeq2 for sensitivity, robustness, and cross-study performance.

Authors: Rezapour M; Wake Forest Institute for Regenerative Medicine (WFIRM), Wake Forest University School of Medicine, Winston-Salem, North Carolina, United States of America.

Source: PloS one [PLoS One] 2026 Jul 13; Vol. 21 (7), pp. e0353788. Date of Electronic Publication: 2026 Jul 13 (Print Publication: 2026).

Publication Type: Journal Article; Comparative Study

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

BrainEnrich: Revealing Biological Insights for Imaging-Derived Phenotypes Through Transcriptomic Enrichment.

Authors: Cao Z Yuan D Qin J et al.

Source: Human brain mapping [Hum Brain Mapp] 2026 Jul; Vol. 47 (10), pp. e70605.

Publication Type: Journal Article

Journal Info: Publisher: Wiley Country of Publication: United States NLM ID: 9419065 Publication Model: Print Cited Medium: Internet ISSN: 1097-0193 (Electronic) Linking ISSN: 10659471 NLM ISO Abbreviation: Hum Brain Mapp Subsets: MEDLINE

Clinical Implementation Gap of Comprehensive Genomic Profiling in Pancreatic Cancer: A Real-world Study.

Authors: Ando M Inoue T Iwata T et al.

Source: In vivo (Athens, Greece) [In Vivo] 2026 Jul-Aug; Vol. 40 (4), pp. 2255-2263.

Publication Type: Journal Article

Journal Info: Publisher: International Institute of Anticancer Research Country of Publication: Greece NLM ID: 8806809 Publication Model: Print Cited Medium: Internet ISSN: 1791-7549 (Electronic) Linking ISSN: 0258851X NLM ISO Abbreviation: In Vivo Subsets: MEDLINE

Identification of Differentially Expressed Genes in Non-functioning Pituitary Adenoma by Transcriptome Analysis.

Authors: Uzkul ND Akkoyunlu DS Cabuk B et al.

Source: In vivo (Athens, Greece) [In Vivo] 2026 Jul-Aug; Vol. 40 (4), pp. 2051-2065.

Publication Type: Journal Article

Journal Info: Publisher: International Institute of Anticancer Research Country of Publication: Greece NLM ID: 8806809 Publication Model: Print Cited Medium: Internet ISSN: 1791-7549 (Electronic) Linking ISSN: 0258851X NLM ISO Abbreviation: In Vivo Subsets: MEDLINE

A new method for evaluating drug efficacy at the gene expression level.

Authors: Chen M Chen G Li Q et al.

Source: Pakistan journal of pharmaceutical sciences [Pak J Pharm Sci] 2026 Jul; Vol. 39 (7), pp. 1949-1956.

Publication Type: Journal Article

Journal Info: Publisher: Faculty of Pharmacy, University of Karachi Country of Publication: Pakistan NLM ID: 9426356 Publication Model: Print Cited Medium: Internet ISSN: 3105-9686 (Electronic) Linking ISSN: 1011601X NLM ISO Abbreviation: Pak J Pharm Sci Subsets: MEDLINE

Transcriptome profiling of peripheral blood for inflammatory subtype classification and diagnostic model construction in asthma.

Authors: Zhou X Chen Y Hui Y

Source: The Journal of asthma : official journal of the Association for the Care of Asthma [J Asthma] 2026 Jul; Vol. 63 (7), pp. 853-862. Date of Electronic Publication: 2026 Mar 13.

Publication Type: Journal Article

Journal Info: Publisher: Informa Healthcare Country of Publication: England NLM ID: 8106454 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1532-4303 (Electronic) Linking ISSN: 02770903 NLM ISO Abbreviation: J Asthma Subsets: MEDLINE

CAdir: Joint clustering of cells and genes for single-cell transcriptomics with visualization-driven cluster quality assessment.

Authors: Kohl C Vingron M

Source: PLoS computational biology [PLoS Comput Biol] 2026 Jun 30; Vol. 22 (6), pp. e1014418. Date of Electronic Publication: 2026 Jun 30 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Integrative cross-sample alignment and spatially differential gene analysis for spatial transcriptomics.

Authors: Tan Y Wang Z Wang A et al.

Source: Nature communications [Nat Commun] 2026 Jun 25; Vol. 17 (1). Date of Electronic Publication: 2026 Jun 25.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

[Revealing the role of Hippo pathway in osteoarthritis based on transcriptomic analysis].

Authors: Pang W Zheng Y

Source: Zhongguo gu shang = China journal of orthopaedics and traumatology [Zhongguo Gu Shang] 2026 Jun 25; Vol. 39 (6), pp. 603-13.

Publication Type: English Abstract; Journal Article

Journal Info: Publisher: Zhongguo gu shang bian ji bu Country of Publication: China NLM ID: 9815790 Publication Model: Print Cited Medium: Print ISSN: 1003-0034 (Print) Linking ISSN: 10030034 NLM ISO Abbreviation: Zhongguo Gu Shang Subsets: MEDLINE

Optimal gene panel selection for targeted spatial transcriptomics experiments.

Authors: Lu H Fang L Zeng O et al.

Source: Nucleic acids research [Nucleic Acids Res] 2026 Jun 08; Vol. 54 (11).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

A Staged Whole-Blood Transcriptomic Framework Identifies a Compact Myeloid-Lymphoid Activity Score in Systemic Lupus Erythematosus.

Authors: Zhang C Pang L Zhu Z et al.

Source: Genes [Genes (Basel)] 2026 Jun 06; Vol. 17 (6). Date of Electronic Publication: 2026 Jun 06.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE

Dynamic Transcriptomic Profiling of Mouse Endometrium Across the Estrous Cycle Reveals Phase-Specific Regulatory Networks Underlying Cyclic Remodelling.

Authors: Wang X Xu K Li B et al.

Source: Journal of cellular and molecular medicine [J Cell Mol Med] 2026 Jun; Vol. 30 (12), pp. e71265.

Publication Type: Journal Article

Journal Info: Publisher: Wiley-Blackwell Country of Publication: England NLM ID: 101083777 Publication Model: Print Cited Medium: Internet ISSN: 1582-4934 (Electronic) Linking ISSN: 15821838 NLM ISO Abbreviation: J Cell Mol Med Subsets: MEDLINE

SECTOR: structural entropy-based learning of spatiotemporal organisation in spatial transcriptomics.

Authors: Huang L Zhang J Gong W et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Jun 01; Vol. 42 (6).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Mendelian Randomization and Transcriptomic Analysis Identify HE4 as a Potential Biomarker for Chronic Obstructive Pulmonary Disease.

Authors: Li MX Zeng ZF Cao ZW

Source: Clinical laboratory [Clin Lab] 2026 Jun 01; Vol. 72 (6).

Publication Type: Journal Article

Journal Info: Publisher: Clinical Laboratory Publications Country of Publication: Germany NLM ID: 9705611 Publication Model: Print Cited Medium: Internet ISSN: 1433-6510 (Print) Linking ISSN: 14336510 NLM ISO Abbreviation: Clin Lab Subsets: MEDLINE

Transcriptomic profiling of varicose veins and associated blood biomarkers.

Authors: Aggarwal A Din Abdul Jabbar MA McCarthy M et al.

Source: Vascular medicine (London, England) [Vasc Med] 2026 Jun; Vol. 31 (3), pp. 264-271. Date of Electronic Publication: 2026 Jun 10.

Publication Type: Journal Article

Journal Info: Publisher: SAGE Publications Country of Publication: England NLM ID: 9610930 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1477-0377 (Electronic) Linking ISSN: 1358863X NLM ISO Abbreviation: Vasc Med Subsets: MEDLINE

scTACL: a multitask topology-aware contrastive learning approach for single-cell transcriptomics analysis.

Authors: Zhou M Lu X Liang Y et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Jun 01; Vol. 42 (6).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

BeetleAtlas 2: An enhanced Tribolium castaneum web resource for tissue and developmental transcriptomics allowing refinement of gene predictions.

Authors: Leader DP Naseem MT Rinke JL et al.

Source: PLoS computational biology [PLoS Comput Biol] 2026 Jun 01; Vol. 22 (6), pp. e1014314. Date of Electronic Publication: 2026 Jun 01 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Integration of Transcriptomics With Interpretable Artificial Intelligence for Identifying Molecular Signatures of Physiological Stress in Sleep Deprivation.

Authors: Wang K Zong Q Wang C et al.

Source: Journal of cellular and molecular medicine [J Cell Mol Med] 2026 Jun; Vol. 30 (11), pp. e71211.

Publication Type: Journal Article

Journal Info: Publisher: Wiley-Blackwell Country of Publication: England NLM ID: 101083777 Publication Model: Print Cited Medium: Internet ISSN: 1582-4934 (Electronic) Linking ISSN: 15821838 NLM ISO Abbreviation: J Cell Mol Med Subsets: MEDLINE

Clarifying the scope and capabilities of ROTS in differential expression analysis.

Authors: Suomi T Kettunen J Pusa T et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Jun 01; Vol. 42 (6).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Atlas-level single-cell integration and clustering-free differential expression analysis with GEDI 2.0.

Authors: Mikaeili Namini A Saberi A Najafabadi HS

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Jun 01; Vol. 42 (6).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE