Search Results - "Geiselmann, J."

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Understanding carbon catabolite repression in Escherichia coli using quantitative models.

Authors: Kremling, A. Geiselmann, J. Ropers, D. et al.

Source: Trends in Microbiology. Feb2015, Vol. 23 Issue 2, p99-109. 11p.

Single-cell data reveal heterogeneity of investment in ribosomes across a bacterial population.

Authors: Pavlou A Cinquemani E Pinel C et al.

Source: Nature communications [Nat Commun] 2025 Jan 02; Vol. 16 (1), pp. 285. Date of Electronic Publication: 2025 Jan 02.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Improving the genetic stability of bacterial growth control for long-term bioproduction.

Authors: Clavier T Pinel C de Jong H et al.

Source: Biotechnology and bioengineering [Biotechnol Bioeng] 2024 Sep; Vol. 121 (9), pp. 2808-2819. Date of Electronic Publication: 2024 Jun 15.

Publication Type: Journal Article

Journal Info: Publisher: Wiley Country of Publication: United States NLM ID: 7502021 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0290 (Electronic) Linking ISSN: 00063592 NLM ISO Abbreviation: Biotechnol Bioeng Subsets: MEDLINE

An ensemble of mathematical models showing diauxic growth behaviour.

Authors: Kremling A Geiselmann J Ropers D et al.

Source: BMC systems biology [BMC Syst Biol] 2018 Sep 21; Vol. 12 (1), pp. 82. Date of Electronic Publication: 2018 Sep 21.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101301827 Publication Model: Electronic Cited Medium: Internet ISSN: 1752-0509 (Electronic) Linking ISSN: 17520509 NLM ISO Abbreviation: BMC Syst Biol

Maturation models of fluorescent proteins are necessary for unbiased estimates of promoter activity.

Authors: Pavlou A Cinquemani E Geiselmann J et al.

Source: Biophysical journal [Biophys J] 2022 Nov 01; Vol. 121 (21), pp. 4179-4188. Date of Electronic Publication: 2022 Sep 21.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0370626 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1542-0086 (Electronic) Linking ISSN: 00063495 NLM ISO Abbreviation: Biophys J Subsets: MEDLINE

Multiomics Study of Bacterial Growth Arrest in a Synthetic Biology Application.

Authors: Ropers D Couté Y Faure L et al.

Source: ACS synthetic biology [ACS Synth Biol] 2021 Nov 19; Vol. 10 (11), pp. 2910-2926. Date of Electronic Publication: 2021 Nov 05.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101575075 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2161-5063 (Electronic) Linking ISSN: 21615063 NLM ISO Abbreviation: ACS Synth Biol Subsets: MEDLINE

Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies.

Authors: Giordano N Mairet F Gouzé JL et al.

Source: PLoS computational biology [PLoS Comput Biol] 2016 Mar 09; Vol. 12 (3), pp. e1004802. Date of Electronic Publication: 2016 Mar 09 (Print Publication: 2016).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

A synthetic growth switch based on controlled expression of RNA polymerase.

Authors: Izard J Gomez Balderas CD Ropers D et al.

Source: Molecular systems biology [Mol Syst Biol] 2015 Nov 23; Vol. 11 (11), pp. 840. Date of Electronic Publication: 2015 Nov 23.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Electronic Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE

Robust reconstruction of gene expression profiles from reporter gene data using linear inversion.

Authors: Zulkower V Page M Ropers D et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2015 Jun 15; Vol. 31 (12), pp. i71-9.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Inference of quantitative models of bacterial promoters from time-series reporter gene data.

Authors: Stefan D Pinel C Pinhal S et al.

Source: PLoS computational biology [PLoS Comput Biol] 2015 Jan 15; Vol. 11 (1), pp. e1004028. Date of Electronic Publication: 2015 Jan 15 (Print Publication: 2015).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

A genome-wide screen for identifying all regulators of a target gene.

Authors: Baptist G Pinel C Ranquet C et al.

Source: Nucleic acids research [Nucleic Acids Res] 2013 Sep; Vol. 41 (17), pp. e164. Date of Electronic Publication: 2013 Jul 26.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Shared control of gene expression in bacteria by transcription factors and global physiology of the cell.

Authors: Berthoumieux S de Jong H Baptist G et al.

Source: Molecular systems biology [Mol Syst Biol] 2013; Vol. 9, pp. 634.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE

The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes.

Authors: Baldazzi V Ropers D Markowicz Y et al.

Source: PLoS computational biology [PLoS Comput Biol] 2010 Jun 10; Vol. 6 (6), pp. e1000812. Date of Electronic Publication: 2010 Jun 10.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: Electronic Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data.

Authors: Boyer F Besson B Baptist G et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2010 May 01; Vol. 26 (9), pp. 1262-3. Date of Electronic Publication: 2010 Jan 22.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria.

Authors: de Jong H Ranquet C Ropers D et al.

Source: BMC systems biology [BMC Syst Biol] 2010 Apr 29; Vol. 4, pp. 55. Date of Electronic Publication: 2010 Apr 29.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101301827 Publication Model: Electronic Cited Medium: Internet ISSN: 1752-0509 (Electronic) Linking ISSN: 17520509 NLM ISO Abbreviation: BMC Syst Biol Subsets: MEDLINE

Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli.

Authors: Pelosi L Kühn L Guetta D et al.

Source: Genetics [Genetics] 2006 Aug; Vol. 173 (4), pp. 1851-69. Date of Electronic Publication: 2006 May 15.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0374636 Publication Model: Print-Electronic Cited Medium: Print ISSN: 0016-6731 (Print) Linking ISSN: 00166731 NLM ISO Abbreviation: Genetics Subsets: MEDLINE

Inferring the connectivity of a regulatory network from mRNA quantification in Synechocystis PCC6803.

Authors: Lemeille S Latifi A Geiselmann J

Source: Nucleic acids research [Nucleic Acids Res] 2005 Jun 08; Vol. 33 (10), pp. 3381-9. Date of Electronic Publication: 2005 Jun 08 (Print Publication: 2005).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli.

Authors: Batt G Ropers D de Jong H et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2005 Jun; Vol. 21 Suppl 1, pp. i19-28.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Print ISSN: 1367-4803 (Print) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Crosstalk regulation among group 2-sigma factors in Synechocystis PCC6803.

Authors: Lemeille S Geiselmann J Latifi A

Source: BMC microbiology [BMC Microbiol] 2005 Apr 22; Vol. 5, pp. 18. Date of Electronic Publication: 2005 Apr 22.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180 (Electronic) Linking ISSN: 14712180 NLM ISO Abbreviation: BMC Microbiol Subsets: MEDLINE