Search Results - "Hashimoto RF"

p53 Orchestrates the Immunogenic-Tolerogenic Pyroptosis Switch in Non-Small Cell Lung Cancer: A Systems Biology Approach.

Authors: Gupta S Silveira DA Dalmolin RJS et al.

Source: Computational and structural biotechnology journal [Comput Struct Biotechnol J] 2026 Jul 21; Vol. 35 (1), pp. 0172. Date of Electronic Publication: 2026 Jul 21 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology Country of Publication: United States NLM ID: 101585369 Publication Model: eCollection Cited Medium: Print ISSN: 2001-0370 (Print) Linking ISSN: 20010370 NLM ISO Abbreviation: Comput Struct Biotechnol J Subsets: PubMed not MEDLINE

Targeting NSCLC drug resistance: Systems biology insights into the MALAT1/miR-145-5p axis and Wip1 in regulating ferroptosis and apoptosis.

Authors: Gupta S Silveira DA Mombach JC et al.

Source: Journal of the Royal Society, Interface [J R Soc Interface] 2025 May; Vol. 22 (226), pp. 20240852. Date of Electronic Publication: 2025 May 28.

Publication Type: Journal Article

Journal Info: Publisher: Royal Society Country of Publication: England NLM ID: 101217269 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1742-5662 (Electronic) Linking ISSN: 17425662 NLM ISO Abbreviation: J R Soc Interface Subsets: MEDLINE

DNA Damage-Induced Ferroptosis: A Boolean Model Regulating p53 and Non-Coding RNAs in Drug Resistance.

Authors: Gupta S Silveira DA Mombach JCM et al.

Source: Proteomes [Proteomes] 2025 Jan 20; Vol. 13 (1). Date of Electronic Publication: 2025 Jan 20.

Publication Type: Journal Article

Journal Info: Publisher: MDPI AG, Multidisciplinary Digital Publishing Institute Country of Publication: Switzerland NLM ID: 101621966 Publication Model: Electronic Cited Medium: Print ISSN: 2227-7382 (Print) Linking ISSN: 22277382 NLM ISO Abbreviation: Proteomes Subsets: PubMed not MEDLINE

The genetically encoded calcium indicator GCaMP3 reveals spontaneous calcium oscillations at asexual stages of the human malaria parasite Plasmodium falciparum.

Authors: Dos Santos BM Pecenin MF Borges-Pereira L et al.

Source: Molecular and biochemical parasitology [Mol Biochem Parasitol] 2024 Dec; Vol. 260, pp. 111650. Date of Electronic Publication: 2024 Aug 14.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier/North-Holland Biomedical Press Country of Publication: Netherlands NLM ID: 8006324 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1872-9428 (Electronic) Linking ISSN: 01666851 NLM ISO Abbreviation: Mol Biochem Parasitol Subsets: MEDLINE

LncRNA PTENP1/miR-21/PTEN Axis Modulates EMT and Drug Resistance in Cancer: Dynamic Boolean Modeling for Cell Fates in DNA Damage Response.

Authors: Gupta S Silveira DA Lorenzoni PR et al.

Source: International journal of molecular sciences [Int J Mol Sci] 2024 Jul 29; Vol. 25 (15). Date of Electronic Publication: 2024 Jul 29.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

A dynamic Boolean network reveals that the BMI1 and MALAT1 axis is associated with drug resistance by limiting miR-145-5p in non-small cell lung cancer.

Authors: Gupta S Silveira DA Piedade GPS et al.

Source: Non-coding RNA research [Noncoding RNA Res] 2023 Oct 19; Vol. 9 (1), pp. 185-193. Date of Electronic Publication: 2023 Oct 19 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Production and hosting by Elsevier B. V. on behalf of KeAi Communications Co., Ltd Country of Publication: Netherlands NLM ID: 101688191 Publication Model: eCollection Cited Medium: Internet ISSN: 2468-0540 (Electronic) Linking ISSN: 24680540 NLM ISO Abbreviation: Noncoding RNA Res Subsets: PubMed not MEDLINE

A Boolean model of the oncogene role of FAM111B in lung adenocarcinoma.

Authors: Gupta S Silveira DA Hashimoto RF

Source: Computational biology and chemistry [Comput Biol Chem] 2023 Oct; Vol. 106, pp. 107926. Date of Electronic Publication: 2023 Jul 14.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: England NLM ID: 101157394 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-928X (Electronic) Linking ISSN: 14769271 NLM ISO Abbreviation: Comput Biol Chem Subsets: MEDLINE

The lncRNA DLX6-AS1/miR-16-5p axis regulates autophagy and apoptosis in non-small cell lung cancer: A Boolean model of cell death.

Authors: Gupta S Silveira DA Mombach JCM et al.

Source: Non-coding RNA research [Noncoding RNA Res] 2023 Aug 10; Vol. 8 (4), pp. 605-614. Date of Electronic Publication: 2023 Aug 10 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Production and hosting by Elsevier B. V. on behalf of KeAi Communications Co., Ltd Country of Publication: Netherlands NLM ID: 101688191 Publication Model: eCollection Cited Medium: Internet ISSN: 2468-0540 (Electronic) Linking ISSN: 24680540 NLM ISO Abbreviation: Noncoding RNA Res Subsets: PubMed not MEDLINE

Quadra-Stable Dynamics of p53 and PTEN in the DNA Damage Response.

Authors: Gupta S Panda PK Silveira DA et al.

Source: Cells [Cells] 2023 Apr 04; Vol. 12 (7). Date of Electronic Publication: 2023 Apr 04.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101600052 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4409 (Electronic) Linking ISSN: 20734409 NLM ISO Abbreviation: Cells Subsets: MEDLINE

Network analysis reveals that the tumor suppressor lncRNA GAS5 acts as a double-edged sword in response to DNA damage in gastric cancer.

Authors: Gupta S Panda PK Luo W et al.

Source: Scientific reports [Sci Rep] 2022 Oct 31; Vol. 12 (1), pp. 18312. Date of Electronic Publication: 2022 Oct 31.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

Dynamical modeling of miR-34a, miR-449a, and miR-16 reveals numerous DDR signaling pathways regulating senescence, autophagy, and apoptosis in HeLa cells.

Authors: Gupta S Panda PK Hashimoto RF et al.

Source: Scientific reports [Sci Rep] 2022 Mar 22; Vol. 12 (1), pp. 4911. Date of Electronic Publication: 2022 Mar 22.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

A Boolean Model of the Proliferative Role of the lncRNA XIST in Non-Small Cell Lung Cancer Cells.

Authors: Gupta S Silveira DA Hashimoto RF et al.

Source: Biology [Biology (Basel)] 2022 Mar 22; Vol. 11 (4). Date of Electronic Publication: 2022 Mar 22.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101587988 Publication Model: Electronic Cited Medium: Print ISSN: 2079-7737 (Print) Linking ISSN: 20797737 NLM ISO Abbreviation: Biology (Basel) Subsets: PubMed not MEDLINE

SARS-CoV-2 host prediction based on virus-host genetic features.

Authors: Kawashima IY Lopez MCN Cunha MDP et al.

Source: Scientific reports [Sci Rep] 2022 Mar 17; Vol. 12 (1), pp. 4576. Date of Electronic Publication: 2022 Mar 17.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

Dynamical Analysis of a Boolean Network Model of the Oncogene Role of lncRNA ANRIL and lncRNA UFC1 in Non-Small Cell Lung Cancer.

Authors: Gupta S Hashimoto RF

Source: Biomolecules [Biomolecules] 2022 Mar 09; Vol. 12 (3). Date of Electronic Publication: 2022 Mar 09.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X (Electronic) Linking ISSN: 2218273X NLM ISO Abbreviation: Biomolecules Subsets: MEDLINE

An Approach to Growth Delimitation of Straight Line Segment Classifiers Based on a Minimum Bounding Box.

Authors: Medina-Rodríguez R Beltrán-Castañón C Hashimoto RF

Source: Entropy (Basel, Switzerland) [Entropy (Basel)] 2021 Nov 19; Vol. 23 (11). Date of Electronic Publication: 2021 Nov 19.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101243874 Publication Model: Electronic Cited Medium: Internet ISSN: 1099-4300 (Electronic) Linking ISSN: 10994300 NLM ISO Abbreviation: Entropy (Basel) Subsets: PubMed not MEDLINE

NERI: network-medicine based integrative approach for disease gene prioritization by relative importance.

Authors: Simões SN Martins DC Jr Pereira CA et al.

Source: BMC bioinformatics [BMC Bioinformatics] 2015; Vol. 16 Suppl 19, pp. S9. Date of Electronic Publication: 2015 Dec 16.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Assessing the gain of biological data integration in gene networks inference.

Authors: Vicente FF Lopes FM Hashimoto RF et al.

Source: BMC genomics [BMC Genomics] 2012; Vol. 13 Suppl 6, pp. S7. Date of Electronic Publication: 2012 Oct 26.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Growing genetic regulatory networks from seed genes.

Authors: Hashimoto RF Kim S Shmulevich I et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2004 May 22; Vol. 20 (8), pp. 1241-7. Date of Electronic Publication: 2004 Feb 10.

Publication Type: Evaluation Study; Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Print ISSN: 1367-4803 (Print) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Genome-wide analysis of the human malaria parasite Plasmodium falciparum transcription factor PfNF-YB shows interaction with a CCAAT motif.

Authors: Lima WR Martins DC Parreira KS et al.

Source: Oncotarget [Oncotarget] 2017 Dec 09; Vol. 8 (69), pp. 113987-114001. Date of Electronic Publication: 2017 Dec 09 (Print Publication: 2017).

Publication Type: Journal Article

Journal Info: Publisher: Impact Journals Country of Publication: United States NLM ID: 101532965 Publication Model: eCollection Cited Medium: Internet ISSN: 1949-2553 (Electronic) Linking ISSN: 19492553 NLM ISO Abbreviation: Oncotarget Subsets: PubMed not MEDLINE

Signaling transcript profile of the asexual intraerythrocytic development cycle of Plasmodium falciparum induced by melatonin and cAMP.

Authors: Lima WR Tessarin-Almeida G Rozanski A et al.

Source: Genes & cancer [Genes Cancer] 2016 Sep; Vol. 7 (9-10), pp. 323-339.

Publication Type: Journal Article

Journal Info: Publisher: Impact Journals LLC Country of Publication: United States NLM ID: 101516546 Publication Model: Print Cited Medium: Print ISSN: 1947-6019 (Print) Linking ISSN: 19476019 NLM ISO Abbreviation: Genes Cancer Subsets: PubMed not MEDLINE