Search Results - "Howison, Mark"

T-shaped alignments integrating HIV-1 near full-length genome and partial pol sequences can improve phylogenetic inference of transmission clusters.

Authors: Guang, August Dunn, Casey W Novitsky, Vlad et al.

Source: PLoS Computational Biology. 11/25/2025, Vol. 21 Issue 11, p1-18. 18p.

An Automated Bioinformatics Pipeline Informing Near-Real-Time Public Health Responses to New HIV Diagnoses in a Statewide HIV Epidemic.

Authors: Howison, Mark Gillani, Fizza S. Novitsky, Vlad et al.

Source: Viruses (1999-4915). Mar2023, Vol. 15 Issue 3, p737. 12p.

Extracting Structured Labor Market Information from Job Postings with Generative AI.

Authors: Howison, Mark Ensor, William O. Maharjan, Suraj et al.

Source: Digital Government: Research & Practice; Mar2025, Vol. 6 Issue 1, p1-12, 12p

Recommending Career Transitions to Job Seekers Using Earnings Estimates, Skills Similarity, and Occupational Demand.

Authors: Howison, Mark Long, Joe Hastings, Justine S.

Source: Digital Government: Research & Practice; Sep2024, Vol. 5 Issue 3, p1-19, 19p

Protecting Sensitive Data with Secure Data Enclaves.

Authors: Howison, Mark Angell, Mintaka Hastings, Justine S.

Source: Digital Government: Research & Practice; Jun2024, Vol. 5 Issue 2, p1-11, 11p

Integrating Partner Services and Molecular Epidemiology Data to Enhance HIV Transmission Disruption in Rhode Island.

Authors: Khanna, Aditya S Novitsky, Vladimir Guang, August et al.

Source: Open Forum Infectious Diseases. Jul2025, Vol. 12 Issue 7, p1-10. 10p.

Prospective Evaluation of Routine Statewide Integration of Molecular Epidemiology and Contact Tracing to Disrupt Human Immunodeficiency Virus Transmission.

Authors: Kantor, Rami Steingrimsson, Jon Fulton, John et al.

Source: Open Forum Infectious Diseases. Oct2024, Vol. 11 Issue 10, p1-9. 9p.

Revising transcriptome assemblies with phylogenetic information.

Authors: Guang, August Howison, Mark Zapata, Felipe et al.

Source: PLoS ONE. 1/12/2021, Vol. 16 Issue 1, p1-16. 16p.

Agalma: an automated phylogenomics workflow.

Authors: Dunn, Casey W. Howison, Mark Zapata, Felipe

Source: BMC Bioinformatics. 2013, Vol. 14 Issue 1, p1-17. 17p. 1 Diagram, 3 Graphs.

When Environmental Inequality Racialized: Historical Evidence from Providence, Rhode Island.

Authors: Frickel, Scott Tollefson, Jonathan

Source: Socius: Sociological Research for a Dynamic World. 9/27/2022, p1-14. 14p.

Statewide Longitudinal Trends in Transmitted HIV-1 Drug Resistance in Rhode Island, USA.

Authors: Novitsky, Vlad Steingrimsson, Jon Gillani, Fizza S et al.

Source: Open Forum Infectious Diseases. Jan2022, Vol. 9 Issue 1, p1-11. 11p.

Challenges in evaluating the use of viral sequence data to identify HIV transmission networks for public health.

Authors: Kantor, Rami Fulton, John P. Steingrimsson, Jon et al.

Source: Statistical Communications in Infectious Diseases. 2020 Supplement 1, Vol. 12, p1-8. 8p.

Added Value of Next Generation Sequencing in Characterizing the Evolution of HIV-1 Drug Resistance in Kenyan Youth.

Authors: Novitsky, Vlad Nyandiko, Winstone Vreeman, Rachel et al.

Source: Viruses (1999-4915). Jul2023, Vol. 15 Issue 7, p1416. 17p.

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Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing.

Authors: Lee, Emma R. Parkin, Neil Jennings, Cheryl et al.

Source: Scientific Reports. 1/31/2020, Vol. 10 Issue 1, p1-10. 10p.

Bayesian Genome Assembly and Assessment by Markov Chain Monte Carlo Sampling.

Authors: Howison, Mark Zapata, Felipe Edwards, Erika J. et al.

Source: PLoS ONE. Jun2014, Vol. 9 Issue 6, p1-7. 7p.

Empirical comparison of analytical approaches for identifying molecular HIV-1 clusters.

Authors: Novitsky, Vlad Steingrimsson, Jon A. Howison, Mark et al.

Source: Scientific Reports. 10/29/2020, Vol. 10 Issue 1, pN.PAG-N.PAG. 1p.

SARS-CoV-2 Variants in Rhode Island; May 2022 Update.

Authors: SINGH, MANJOT NOVITSKY, VLADIMIR CARPENTER-AZEVEDO, KRISTIN et al.

Source: Rhode Island Medical Journal. Aug2022, Vol. 105 Issue 6, p7-12. 6p.

SARS-CoV-2 Variants in Rhode Island.

Authors: KANTOR, RAMI NOVITSKY, VLADIMIR CARPENTER-AZEVEDO, KRISTIN et al.

Source: Rhode Island Medical Journal. Sep2021, Vol. 104 Issue 7, p50-54. 5p.

Multi-Laboratory Comparison of Next-Generation to Sanger-Based Sequencing for HIV-1 Drug Resistance Genotyping.

Authors: Parkin, Neil T. Avila-Rios, Santiago Bibby, David F. et al.

Source: Viruses (1999-4915). Jul2020, Vol. 12 Issue 7, p694. 1p.