Search Results - "Howison M"

Mining Spatio-temporal Data on Industrialization from Historical Registries.

Authors: Berenbaum, D. Deighan, D. Marlow, T. et al.

Source: Journal of Environmental Informatics. Sep2019, Vol. 34 Issue 1, p28-34. 7p.

T-shaped alignments integrating HIV-1 near full-length genome and partial pol sequences can improve phylogenetic inference of transmission clusters.

Authors: Guang A Dunn CW Novitsky V et al.

Source: PLoS computational biology [PLoS Comput Biol] 2025 Nov 25; Vol. 21 (11), pp. e1013676. Date of Electronic Publication: 2025 Nov 25 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Acquired Human Immunodeficiency Virus Type 1 Drug Resistance in Rhode Island, USA, 2004-2021.

Authors: Aung S Novitsky V Steingrimsson J et al.

Source: The Journal of infectious diseases [J Infect Dis] 2024 Dec 16; Vol. 230 (6), pp. 1422-1433.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0413675 Publication Model: Print Cited Medium: Internet ISSN: 1537-6613 (Electronic) Linking ISSN: 00221899 NLM ISO Abbreviation: J Infect Dis Subsets: MEDLINE

Integrating Partner Services and Molecular Epidemiology Data to Enhance HIV Transmission Disruption in Rhode Island.

Authors: Khanna AS Novitsky V Guang A et al.

Source: Open forum infectious diseases [Open Forum Infect Dis] 2025 Jun 11; Vol. 12 (7), pp. ofaf341. Date of Electronic Publication: 2025 Jun 11 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Published by Oxford University Press on behalf of the Infectious Diseases Society of America Country of Publication: United States NLM ID: 101637045 Publication Model: eCollection Cited Medium: Print ISSN: 2328-8957 (Print) Linking ISSN: 23288957 NLM ISO Abbreviation: Open Forum Infect Dis Subsets: PubMed not MEDLINE

Dynamics of clustering rates in the Rhode Island HIV-1 epidemic.

Authors: Novitsky V Steingrimsson J Guang A et al.

Source: AIDS (London, England) [AIDS] 2025 Feb 01; Vol. 39 (2), pp. 105-114. Date of Electronic Publication: 2024 Nov 08.

Publication Type: Journal Article

Journal Info: Publisher: Lippincott Williams & Wilkins Country of Publication: England NLM ID: 8710219 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1473-5571 (Electronic) Linking ISSN: 02699370 NLM ISO Abbreviation: AIDS Subsets: MEDLINE

SARS-CoV-2 Variants in Rhode Island; May 2022 Update.

Authors: Singh M Novitsky V Carpenter-Azevedo K et al.

Source: Rhode Island medical journal (2013) [R I Med J (2013)] 2022 Aug 01; Vol. 105 (6), pp. 6-11. Date of Electronic Publication: 2022 Aug 01.

Publication Type: Journal Article

Journal Info: Publisher: Rhode Island Medical Society Country of Publication: United States NLM ID: 101605827 Publication Model: Electronic Cited Medium: Internet ISSN: 2327-2228 (Electronic) NLM ISO Abbreviation: R I Med J (2013) Subsets: MEDLINE

Evolution of Gene Expression across Species and Specialized Zooids in Siphonophora.

Authors: Munro C Zapata F Howison M et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2022 Feb 03; Vol. 39 (2).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

Prospective Evaluation of Routine Statewide Integration of Molecular Epidemiology and Contact Tracing to Disrupt Human Immunodeficiency Virus Transmission.

Authors: Kantor R Steingrimsson J Fulton J et al.

Source: Open forum infectious diseases [Open Forum Infect Dis] 2024 Oct 09; Vol. 11 (10), pp. ofae599. Date of Electronic Publication: 2024 Oct 09 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Published by Oxford University Press on behalf of the Infectious Diseases Society of America Country of Publication: United States NLM ID: 101637045 Publication Model: eCollection Cited Medium: Print ISSN: 2328-8957 (Print) Linking ISSN: 23288957 NLM ISO Abbreviation: Open Forum Infect Dis Subsets: PubMed not MEDLINE

SARS-CoV-2 Variants in Rhode Island.

Authors: Kantor R Novitsky V Carpenter-Azevedo K et al.

Source: Rhode Island medical journal (2013) [R I Med J (2013)] 2021 Sep 01; Vol. 104 (7), pp. 16-20. Date of Electronic Publication: 2021 Sep 01.

Publication Type: Journal Article

Journal Info: Publisher: Rhode Island Medical Society Country of Publication: United States NLM ID: 101605827 Publication Model: Electronic Cited Medium: Internet ISSN: 2327-2228 (Electronic) NLM ISO Abbreviation: R I Med J (2013) Subsets: MEDLINE

Revising transcriptome assemblies with phylogenetic information.

Authors: Guang A Howison M Zapata F et al.

Source: PloS one [PLoS One] 2021 Jan 12; Vol. 16 (1), pp. e0244202. Date of Electronic Publication: 2021 Jan 12 (Print Publication: 2021).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Added Value of Next Generation Sequencing in Characterizing the Evolution of HIV-1 Drug Resistance in Kenyan Youth.

Authors: Novitsky V Nyandiko W Vreeman R et al.

Source: Viruses [Viruses] 2023 Jun 22; Vol. 15 (7). Date of Electronic Publication: 2023 Jun 22.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915 (Electronic) Linking ISSN: 19994915 NLM ISO Abbreviation: Viruses Subsets: MEDLINE

Occupational models from 42 million unstructured job postings.

Authors: Dixon N Goggins M Ho E et al.

Source: Patterns (New York, N.Y.) [Patterns (N Y)] 2023 May 22; Vol. 4 (7), pp. 100757. Date of Electronic Publication: 2023 May 22 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 101767765 Publication Model: eCollection Cited Medium: Internet ISSN: 2666-3899 (Electronic) Linking ISSN: 26663899 NLM ISO Abbreviation: Patterns (N Y) Subsets: PubMed not MEDLINE

An Automated Bioinformatics Pipeline Informing Near-Real-Time Public Health Responses to New HIV Diagnoses in a Statewide HIV Epidemic.

Authors: Howison M Gillani FS Novitsky V et al.

Source: Viruses [Viruses] 2023 Mar 13; Vol. 15 (3). Date of Electronic Publication: 2023 Mar 13.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915 (Electronic) Linking ISSN: 19994915 NLM ISO Abbreviation: Viruses Subsets: MEDLINE

Not all clusters are equal: dynamics of molecular HIV-1 clusters in a statewide Rhode Island epidemic.

Authors: Novitsky V Steingrimsson J Howison M et al.

Source: AIDS (London, England) [AIDS] 2023 Mar 01; Vol. 37 (3), pp. 389-399. Date of Electronic Publication: 2022 Nov 10.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Lippincott Williams & Wilkins Country of Publication: England NLM ID: 8710219 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1473-5571 (Electronic) Linking ISSN: 02699370 NLM ISO Abbreviation: AIDS Subsets: MEDLINE

Measurement error and variant-calling in deep Illumina sequencing of HIV.

Authors: Howison M Coetzer M Kantor R

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2019 Jun 01; Vol. 35 (12), pp. 2029-2035.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Bioinformatic data processing pipelines in support of next-generation sequencing-based HIV drug resistance testing: the Winnipeg Consensus.

Authors: Ji H Enns E Brumme CJ et al.

Source: Journal of the International AIDS Society [J Int AIDS Soc] 2018 Oct; Vol. 21 (10), pp. e25193.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Consensus Statement

Journal Info: Publisher: John Wiley & Sons, Inc Country of Publication: Switzerland NLM ID: 101478566 Publication Model: Print Cited Medium: Internet ISSN: 1758-2652 (Electronic) Linking ISSN: 17582652 NLM ISO Abbreviation: J Int AIDS Soc Subsets: MEDLINE

Beyond HIV outbreaks: protocol, rationale and implementation of a prospective study quantifying the benefit of incorporating viral sequence clustering analysis into routine public health interventions.

Authors: Steingrimsson JA Fulton J Howison M et al.

Source: BMJ open [BMJ Open] 2022 Apr 21; Vol. 12 (4), pp. e060184. Date of Electronic Publication: 2022 Apr 21.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BMJ Publishing Group Ltd Country of Publication: England NLM ID: 101552874 Publication Model: Electronic Cited Medium: Internet ISSN: 2044-6055 (Electronic) Linking ISSN: 20446055 NLM ISO Abbreviation: BMJ Open Subsets: MEDLINE

Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.

Authors: Earnest R Uddin R Matluk N et al.

Corporate Authors: Earnest R Uddin R Matluk N et al.

Source: Cell reports. Medicine [Cell Rep Med] 2022 Mar 11; Vol. 3 (4), pp. 100583. Date of Electronic Publication: 2022 Mar 11 (Print Publication: 2022).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101766894 Publication Model: eCollection Cited Medium: Internet ISSN: 2666-3791 (Electronic) Linking ISSN: 26663791 NLM ISO Abbreviation: Cell Rep Med Subsets: MEDLINE

Incorporating Within-Host Diversity in Phylogenetic Analyses for Detecting Clusters of New HIV Diagnoses.

Authors: Guang A Howison M Ledingham L et al.

Source: Frontiers in microbiology [Front Microbiol] 2022 Feb 17; Vol. 12, pp. 803190. Date of Electronic Publication: 2022 Feb 17 (Print Publication: 2021).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE

Statewide Longitudinal Trends in Transmitted HIV-1 Drug Resistance in Rhode Island, USA.

Authors: Novitsky V Steingrimsson J Gillani FS et al.

Source: Open forum infectious diseases [Open Forum Infect Dis] 2021 Dec 07; Vol. 9 (1), pp. ofab587. Date of Electronic Publication: 2021 Dec 07 (Print Publication: 2022).

Publication Type: Journal Article

Journal Info: Publisher: Published by Oxford University Press on behalf of the Infectious Diseases Society of America Country of Publication: United States NLM ID: 101637045 Publication Model: eCollection Cited Medium: Print ISSN: 2328-8957 (Print) Linking ISSN: 23288957 NLM ISO Abbreviation: Open Forum Infect Dis Subsets: PubMed not MEDLINE