Search Results - "Kaste JAM"

Metabolic modeling predicts synergistic growth benefits between arbuscular mycorrhizal fungi and theoretical N2-fixing rhizobia symbiosis in maize.

Authors: Kaste JAM Ji R Sydow P et al.

Source: Plant physiology [Plant Physiol] 2026 Jul 02; Vol. 201 (3).

Publication Type: Journal Article

Journal Info: Publisher: American Society of Plant Biologists Country of Publication: United States NLM ID: 0401224 Publication Model: Print Cited Medium: Internet ISSN: 1532-2548 (Electronic) Linking ISSN: 00320889 NLM ISO Abbreviation: Plant Physiol Subsets: MEDLINE

Predictive multispecies constraint-based metabolic modeling: case studies and best practices.

Authors: Kaste JAM Matthews ML

Source: Briefings in bioinformatics [Brief Bioinform] 2026 Mar 01; Vol. 27 (2).

Publication Type: Journal Article; Review

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

Metabolic flux analysis in leaf metabolism quantifies the link between photorespiration and one carbon metabolism.

Authors: Gashu K Kaste JAM Roje S et al.

Source: Nature plants [Nat Plants] 2025 Sep; Vol. 11 (9), pp. 1877-1889. Date of Electronic Publication: 2025 Sep 03.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group, a division of Macmillan Publishers Limited Country of Publication: England NLM ID: 101651677 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2055-0278 (Electronic) Linking ISSN: 20550278 NLM ISO Abbreviation: Nat Plants Subsets: MEDLINE

Model validation and selection in metabolic flux analysis and flux balance analysis.

Authors: Kaste JAM Shachar-Hill Y

Source: Biotechnology progress [Biotechnol Prog] 2024 Jan-Feb; Vol. 40 (1), pp. e3413. Date of Electronic Publication: 2023 Nov 24.

Publication Type: Journal Article; Review; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural

Journal Info: Publisher: Wiley-Blackwell Country of Publication: United States NLM ID: 8506292 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-6033 (Electronic) Linking ISSN: 15206033 NLM ISO Abbreviation: Biotechnol Prog Subsets: MEDLINE

Topological data analysis reveals a core gene expression backbone that defines form and function across flowering plants.

Authors: Palande S Kaste JAM Roberts MD et al.

Source: PLoS biology [PLoS Biol] 2023 Dec 05; Vol. 21 (12), pp. e3002397. Date of Electronic Publication: 2023 Dec 05 (Print Publication: 2023).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

The effects of photosynthetic rate on respiration in light, starch/sucrose partitioning, and other metabolic fluxes within photosynthesis.

Authors: Xu Y Kaste JAM Weise SE et al.

Source: Scientific reports [Sci Rep] 2025 Mar 11; Vol. 15 (1), pp. 8389. Date of Electronic Publication: 2025 Mar 11.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

Accurate flux predictions using tissue-specific gene expression in plant metabolic modeling.

Authors: Kaste JAM Shachar-Hill Y

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 May 04; Vol. 39 (5).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Modeling with uncertainty quantification reveals the essentials of a non-canonical algal carbon-concentrating mechanism.

Authors: Steensma AK Kaste JAM Heo J et al.

Source: Plant physiology [Plant Physiol] 2025 Feb 07; Vol. 197 (2).

Publication Type: Journal Article

Journal Info: Publisher: American Society of Plant Biologists Country of Publication: United States NLM ID: 0401224 Publication Model: Print Cited Medium: Internet ISSN: 1532-2548 (Electronic) Linking ISSN: 00320889 NLM ISO Abbreviation: Plant Physiol Subsets: MEDLINE

Reaction-diffusion modeling provides insights into biophysical carbon-concentrating mechanisms in land plants.

Authors: Kaste JAM Walker BJ Shachar-Hill Y

Source: Plant physiology [Plant Physiol] 2024 Oct 01; Vol. 196 (2), pp. 1374-1390.

Publication Type: Journal Article

Journal Info: Publisher: American Society of Plant Biologists Country of Publication: United States NLM ID: 0401224 Publication Model: Print Cited Medium: Internet ISSN: 1532-2548 (Electronic) Linking ISSN: 00320889 NLM ISO Abbreviation: Plant Physiol Subsets: MEDLINE

Biophysical carbon concentrating mechanisms in land plants: insights from reaction-diffusion modeling.

Authors: Kaste JAM Walker BJ Shachar-Hill Y

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Jan 05. Date of Electronic Publication: 2024 Jan 05.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Integrative teaching of metabolic modeling and flux analysis with interactive python modules.

Authors: Kaste JAM Green A Shachar-Hill Y

Source: Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology [Biochem Mol Biol Educ] 2023 Nov-Dec; Vol. 51 (6), pp. 653-661. Date of Electronic Publication: 2023 Aug 16.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: John Wiley & sons Country of Publication: United States NLM ID: 100970605 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1539-3429 (Electronic) Linking ISSN: 14708175 NLM ISO Abbreviation: Biochem Mol Biol Educ Subsets: MEDLINE

Model Validation and Selection in Metabolic Flux Analysis and Flux Balance Analysis.

Authors: Kaste JAM Shachar-Hill Y

Source: ArXiv [ArXiv] 2023 Mar 22. Date of Electronic Publication: 2023 Mar 22.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101759493 Publication Model: Electronic Cited Medium: Internet ISSN: 2331-8422 (Electronic) Linking ISSN: 23318422 NLM ISO Abbreviation: ArXiv Subsets: PubMed not MEDLINE

Flux-Balance Analysis and Mobile CRISPRi-Guided Deletion of a Conditionally Essential Gene in Shewanella oneidensis MR-1.

Authors: Ford KC Kaste JAM Shachar-Hill Y et al.

Source: ACS synthetic biology [ACS Synth Biol] 2022 Oct 21; Vol. 11 (10), pp. 3405-3413. Date of Electronic Publication: 2022 Oct 11.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101575075 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2161-5063 (Electronic) Linking ISSN: 21615063 NLM ISO Abbreviation: ACS Synth Biol Subsets: MEDLINE

Reimport of carbon from cytosolic and vacuolar sugar pools into the Calvin-Benson cycle explains photosynthesis labeling anomalies.

Authors: Xu Y Wieloch T Kaste JAM et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2022 Mar 15; Vol. 119 (11), pp. e2121531119. Date of Electronic Publication: 2022 Mar 08.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE