Search Results - "Kaste JAM"

Metabolic flux analysis in leaf metabolism quantifies the link between photorespiration and one carbon metabolism.

Authors: Gashu K Kaste JAM Roje S et al.

Source: Nature plants [Nat Plants] 2025 Sep; Vol. 11 (9), pp. 1877-1889. Date of Electronic Publication: 2025 Sep 03.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group, a division of Macmillan Publishers Limited Country of Publication: England NLM ID: 101651677 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2055-0278 (Electronic) Linking ISSN: 20550278 NLM ISO Abbreviation: Nat Plants Subsets: MEDLINE

Model validation and selection in metabolic flux analysis and flux balance analysis.

Authors: Kaste JAM Shachar-Hill Y

Source: Biotechnology progress [Biotechnol Prog] 2024 Jan-Feb; Vol. 40 (1), pp. e3413. Date of Electronic Publication: 2023 Nov 24.

Publication Type: Journal Article; Review; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural

Journal Info: Publisher: Wiley-Blackwell Country of Publication: United States NLM ID: 8506292 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-6033 (Electronic) Linking ISSN: 15206033 NLM ISO Abbreviation: Biotechnol Prog Subsets: MEDLINE

Topological data analysis reveals a core gene expression backbone that defines form and function across flowering plants.

Authors: Palande S Kaste JAM Roberts MD et al.

Source: PLoS biology [PLoS Biol] 2023 Dec 05; Vol. 21 (12), pp. e3002397. Date of Electronic Publication: 2023 Dec 05 (Print Publication: 2023).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

The effects of photosynthetic rate on respiration in light, starch/sucrose partitioning, and other metabolic fluxes within photosynthesis.

Authors: Xu Y Kaste JAM Weise SE et al.

Source: Scientific reports [Sci Rep] 2025 Mar 11; Vol. 15 (1), pp. 8389. Date of Electronic Publication: 2025 Mar 11.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

Topological data analysis reveals core heteroblastic and ontogenetic programs embedded in leaves of grapevine (Vitaceae) and maracuyá (Passifloraceae).

Authors: Percival, Sarah Onyenedum, Joyce G. Chitwood, Daniel H. et al.

Source: PLoS Computational Biology. 2/5/2024, Vol. 20 Issue 2, p1-20. 20p.

Gene–environment–brain topology reveals clinical subtypes of depression in UK Biobank.

Authors: Tassi, Emma Pigoni, Alessandro Turtulici, Nunzio et al.

Source: Scientific Reports. 10/10/2025, Vol. 15 Issue 1, p1-20. 20p.

In vivo and in silico models of Drosophila for Parkinson's disease.

Authors: Cesur, Müberra Fatma Strazdins, Rachel Sarkar, Souvarish et al.

Source: FEBS Journal. 9/15/2025, Vol. 292 Issue 18, p4753-4773. 21p.

One-pot bioprocessing: dynamics and opportunities for integrated multiproduct recovery-a review.

Authors: Ojwang DO Chebon SK Mulaa FJ

Source: Bioprocess and biosystems engineering [Bioprocess Biosyst Eng] 2026 Jul; Vol. 49 (7), pp. 1753-1766. Date of Electronic Publication: 2026 May 08.

Publication Type: Journal Article; Review

Journal Info: Publisher: Springer-Verlag Country of Publication: Germany NLM ID: 101088505 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1615-7605 (Electronic) Linking ISSN: 16157591 NLM ISO Abbreviation: Bioprocess Biosyst Eng Subsets: MEDLINE

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COMO: a pipeline for multi-omics data integration in metabolic modeling and drug discovery.

Authors: Bessell, Brandt Loecker, Josh Zhao, Zhongyuan et al.

Source: Briefings in Bioinformatics. Nov2023, Vol. 24 Issue 6, p1-10. 10p.

Arabidopsis photorespiration is not limited by mitochondrial serine hydroxymethyltransferase 1.

Authors: Timm S Florian A Fernie AR et al.

Source: Planta [Planta] 2026 Mar 25; Vol. 263 (5). Date of Electronic Publication: 2026 Mar 25.

Publication Type: Journal Article

Journal Info: Publisher: Springer-Verlag [etc.] Country of Publication: Germany NLM ID: 1250576 Publication Model: Electronic Cited Medium: Internet ISSN: 1432-2048 (Electronic) Linking ISSN: 00320935 NLM ISO Abbreviation: Planta Subsets: MEDLINE

Strategies to improve photosynthesis by modifying the RuBisCO system and its limitations.

Authors: Namachivayam R Manickam GP Eswaran K et al.

Source: Molecular biology reports [Mol Biol Rep] 2025 Sep 26; Vol. 52 (1), pp. 951. Date of Electronic Publication: 2025 Sep 26.

Publication Type: Journal Article; Review

Journal Info: Publisher: Reidel Country of Publication: Netherlands NLM ID: 0403234 Publication Model: Electronic Cited Medium: Internet ISSN: 1573-4978 (Electronic) Linking ISSN: 03014851 NLM ISO Abbreviation: Mol Biol Rep Subsets: MEDLINE

Metabolic models predict fotemustine and the combination of eflornithine/rifamycin and adapalene/cannabidiol for the treatment of gliomas.

Authors: Kishk, Ali Pacheco, Maria Pires Heurtaux, Tony et al.

Source: Briefings in Bioinformatics. May2024, Vol. 25 Issue 3, p1-15. 15p.

Mechanisms of metabolic adaptation in the duckweed Lemna gibba: an integrated metabolic, transcriptomic and flux analysis.

Authors: Shi, Hai Ernst, Evan Heinzel, Nicolas et al.

Source: BMC Plant Biology. 10/3/2023, Vol. 23 Issue 1, p1-20. 20p.

Accurate flux predictions using tissue-specific gene expression in plant metabolic modeling.

Authors: Kaste JAM Shachar-Hill Y

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 May 04; Vol. 39 (5).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Interdisciplinary medical education practices: building a case-driven interdisciplinary simulation system based on public datasets.

Authors: Qiu K Zeng T Xia W et al.

Source: BMC medical education [BMC Med Educ] 2025 Jul 11; Vol. 25 (1), pp. 1037. Date of Electronic Publication: 2025 Jul 11.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101088679 Publication Model: Electronic Cited Medium: Internet ISSN: 1472-6920 (Electronic) Linking ISSN: 14726920 NLM ISO Abbreviation: BMC Med Educ Subsets: MEDLINE

13CFLUX - third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis.

Authors: Stratmann A Beyß M Jadebeck JF et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2025 Dec 01; Vol. 41 (12).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

The cell as a token: high-dimensional geometry in language models and cell embeddings.

Authors: Gilpin W; Department of Physics, The University of Texas at Austin, Austin, TX 78712, United States.; Medici Therapeutics, Boston, MA 02114, United States.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2025 Nov 01; Vol. 41 (11).

Publication Type: Journal Article; Review

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Evaluating the contribution of plant metabolic pathways in the light to the ATP:NADPH demand using a meta-analysis of isotopically non-stationary metabolic flux analyses.

Authors: Smith K Strand DD Walker BJ

Source: Photosynthesis research [Photosynth Res] 2024 Sep; Vol. 161 (3), pp. 177-189. Date of Electronic Publication: 2024 Jun 14.

Publication Type: Journal Article; Meta-Analysis

Journal Info: Publisher: Springer Country of Publication: Netherlands NLM ID: 100954728 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1573-5079 (Electronic) Linking ISSN: 01668595 NLM ISO Abbreviation: Photosynth Res Subsets: MEDLINE

Plastid ancestors lacked a complete Entner-Doudoroff pathway, limiting plants to glycolysis and the pentose phosphate pathway.

Authors: Evans SE Franks AE Bergman ME et al.

Source: Nature communications [Nat Commun] 2024 Feb 06; Vol. 15 (1), pp. 1102. Date of Electronic Publication: 2024 Feb 06.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Intramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE