Search Results - "Kieft JS"

Enterovirus RNase L inhibiting RNAs are highly conserved with limited phylogenetic distribution.

Authors: Zangari SI Sherlock ME Kieft JS

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Jun 30. Date of Electronic Publication: 2026 Jun 30.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Focal adhesion kinase promotes ribosome biogenesis to drive advanced thyroid cancer cell growth and survival.

Authors: Kellett MD Sharma V Sherlock ME et al.

Source: Frontiers in oncology [Front Oncol] 2025 May 19; Vol. 15, pp. 1252544. Date of Electronic Publication: 2025 May 19 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101568867 Publication Model: eCollection Cited Medium: Print ISSN: 2234-943X (Print) Linking ISSN: 2234943X NLM ISO Abbreviation: Front Oncol Subsets: PubMed not MEDLINE

Tick-borne flavivirus exoribonuclease-resistant RNAs contain a double loop structure.

Authors: Langeberg CJ Szucs MJ Sherlock ME et al.

Source: Nature communications [Nat Commun] 2025 May 15; Vol. 16 (1), pp. 4515. Date of Electronic Publication: 2025 May 15.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Distribution and structural diversity of type IV internal ribosome entry sites.

Authors: Segar KE Sherlock ME Kieft JS

Source: RNA (New York, N.Y.) [RNA] 2026 Apr 16; Vol. 32 (5), pp. 622-634. Date of Electronic Publication: 2026 Apr 16.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9509184 Publication Model: Electronic Cited Medium: Internet ISSN: 1469-9001 (Electronic) Linking ISSN: 13558382 NLM ISO Abbreviation: RNA Subsets: MEDLINE

An A-rich linker between dengue virus tandem xrRNAs facilitates functional coordination.

Authors: Spear E O'Donoghue Z Bonilla SL et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Mar 04. Date of Electronic Publication: 2026 Mar 04.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

A bicistronic viral genome uses a compact type IV IRES near its 3' end to express a transmembrane protein.

Authors: Sherlock ME Segar KE Kieft JS

Source: Cell reports [Cell Rep] 2026 Feb 24; Vol. 45 (2), pp. 116982. Date of Electronic Publication: 2026 Feb 11.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

Translon: a single term for translated regions.

Authors: Świrski MI Tierney JAS Albà MM et al.

Corporate Authors: Świrski MI Tierney JAS Albà MM et al.

Source: Nature methods [Nat Methods] 2025 Oct; Vol. 22 (10), pp. 2002-2006.

Publication Type: Letter

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE; In Process

A generalizable scaffold-based approach for structure determination of RNAs by cryo-EM.

Authors: Langeberg CJ Kieft JS

Source: Nucleic acids research [Nucleic Acids Res] 2023 Nov 10; Vol. 51 (20), pp. e100.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

A compact viral IRES translates a downstream open reading frame.

Authors: Sherlock ME Segar KE Kieft JS

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 May 13. Date of Electronic Publication: 2025 May 13.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Distribution and structural diversity of Type IV internal ribosome entry sites.

Authors: Segar KE Sherlock ME Kieft JS

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 May 12. Date of Electronic Publication: 2025 May 12.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR).

Authors: Loughran G Andreev DE Terenin IM et al.

Source: Nature structural & molecular biology [Nat Struct Mol Biol] 2025 Mar; Vol. 32 (3), pp. 418-430. Date of Electronic Publication: 2025 Mar 03.

Publication Type: Journal Article; Review

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101186374 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-9985 (Electronic) Linking ISSN: 15459985 NLM ISO Abbreviation: Nat Struct Mol Biol Subsets: MEDLINE

A conserved class of viral RNA structures regulates translation reinitiation through dynamic ribosome interactions.

Authors: Sherlock ME Langeberg CJ Segar KE et al.

Source: Cell reports [Cell Rep] 2025 Feb 25; Vol. 44 (2), pp. 115236. Date of Electronic Publication: 2025 Feb 01.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

RNA-Puzzles Round V: blind predictions of 23 RNA structures.

Authors: Bu F Adam Y Adamiak RW et al.

Source: Nature methods [Nat Methods] 2025 Feb; Vol. 22 (2), pp. 399-411. Date of Electronic Publication: 2024 Dec 02.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

Therapeutic resistance in acute myeloid leukemia cells is mediated by a novel ATM/mTOR pathway regulating oxidative phosphorylation.

Authors: Park HJ Gregory MA Zaberezhnyy V et al.

Source: ELife [Elife] 2022 Oct 19; Vol. 11. Date of Electronic Publication: 2022 Oct 19.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

A viral RNA hijacks host machinery using dynamic conformational changes of a tRNA-like structure.

Authors: Bonilla SL Sherlock ME MacFadden A et al.

Source: Science (New York, N.Y.) [Science] 2021 Nov 19; Vol. 374 (6570), pp. 955-960. Date of Electronic Publication: 2021 Nov 18.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

The Giardia lamblia ribosome structure reveals divergence in several biological pathways and the mode of emetine function.

Authors: Eiler DR Wimberly BT Bilodeau DY et al.

Source: Structure (London, England : 1993) [Structure] 2024 Apr 04; Vol. 32 (4), pp. 400-410.e4. Date of Electronic Publication: 2024 Jan 18.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101087697 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1878-4186 (Electronic) Linking ISSN: 09692126 NLM ISO Abbreviation: Structure Subsets: MEDLINE

Diversity and modularity of tyrosine-accepting tRNA-like structures.

Authors: Sherlock ME Langeberg CJ Kieft JS

Source: RNA (New York, N.Y.) [RNA] 2024 Feb 16; Vol. 30 (3), pp. 213-222. Date of Electronic Publication: 2024 Feb 16.

Publication Type: Journal Article

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9509184 Publication Model: Electronic Cited Medium: Internet ISSN: 1469-9001 (Electronic) Linking ISSN: 13558382 NLM ISO Abbreviation: RNA Subsets: MEDLINE

Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication.

Authors: Akiyama BM Graham ME O Donoghue Z et al.

Source: Nucleic acids research [Nucleic Acids Res] 2021 Jul 09; Vol. 49 (12), pp. 7122-7138.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Recognition of non-CpG repeats in Alu and ribosomal RNAs by the Z-RNA binding domain of ADAR1 induces A-Z junctions.

Authors: Nichols PJ Bevers S Henen M et al.

Source: Nature communications [Nat Commun] 2021 Feb 04; Vol. 12 (1), pp. 793. Date of Electronic Publication: 2021 Feb 04.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

An Evolutionarily Conserved Strategy for Ribosome Binding and Host Translation Inhibition by β-coronavirus Non-structural Protein 1.

Authors: Maurina SF O'Sullivan JP Sharma G et al.

Source: Journal of molecular biology [J Mol Biol] 2023 Oct 15; Vol. 435 (20), pp. 168259. Date of Electronic Publication: 2023 Sep 01.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE