Search Results - "Kozlowski LP"

Residue-level determinants of the thermal stability of the extremophilic Ts2631 endolysin.

Authors: Cieminska K Kaczorowska AK Kozlowski LP et al.

Source: Scientific reports [Sci Rep] 2026 Feb 06; Vol. 16 (1). Date of Electronic Publication: 2026 Feb 06.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

A transcription factor from the cryptic Escherichia coli Rac prophage controls both phage and host operons.

Authors: Wons E Gucwa K Lewandowska N et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Feb 27; Vol. 53 (5).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Lethal perturbation of an Escherichia coli regulatory network is triggered by a restriction-modification system's regulator and can be mitigated by excision of the cryptic prophage Rac.

Authors: Gucwa K Wons E Wisniewska A et al.

Source: Nucleic acids research [Nucleic Acids Res] 2024 Apr 12; Vol. 52 (6), pp. 2942-2960.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

IPC 2.0: prediction of isoelectric point and pKa dissociation constants.

Authors: Kozlowski LP; Institute of Informatics, Faculty of Mathematics, Informatics, and Mechanics, University of Warsaw, Warsaw, Mazovian Voivodeship 02-097, Poland.

Source: Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W285-W292.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Molecular characterization of the PhiKo endolysin from Thermus thermophilus HB27 bacteriophage phiKo and its cryptic lytic peptide RAP-29.

Authors: Szadkowska M Kocot AM Sowik D et al.

Source: Frontiers in microbiology [Front Microbiol] 2024 Jan 19; Vol. 14, pp. 1303794. Date of Electronic Publication: 2024 Jan 19 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE

Molecular Characterization of a DNA Polymerase from Thermus thermophilus MAT72 Phage vB_Tt72: A Novel Type-A Family Enzyme with Strong Proofreading Activity.

Authors: Dorawa S Werbowy O Plotka M et al.

Source: International journal of molecular sciences [Int J Mol Sci] 2022 Jul 19; Vol. 23 (14). Date of Electronic Publication: 2022 Jul 19.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

Proteome-pI 2.0: proteome isoelectric point database update.

Authors: Kozlowski LP; Institute of Informatics, Faculty of Mathematics, Informatics, and Mechanics, University of Warsaw, Warsaw, Mazovian Voivodeship 02-097, Poland.

Source: Nucleic acids research [Nucleic Acids Res] 2022 Jan 07; Vol. 50 (D1), pp. D1535-D1540.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Novel Lytic Enzyme of Prophage Origin from Clostridium botulinum E3 Strain Alaska E43 with Bactericidal Activity against Clostridial Cells.

Authors: Morzywolek A Plotka M Kaczorowska AK et al.

Source: International journal of molecular sciences [Int J Mol Sci] 2021 Sep 02; Vol. 22 (17). Date of Electronic Publication: 2021 Sep 02.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

Proteome-pI: proteome isoelectric point database.

Authors: Kozlowski LP; Quantitative and Computational Biology Group, Max Planck Institute for Biophysical Chemistry, Göttingen, Lower Saxony, 37077, Germany lukasz.kozlowski.lpk@gmail.com.

Source: Nucleic acids research [Nucleic Acids Res] 2017 Jan 04; Vol. 45 (D1), pp. D1112-D1116. Date of Electronic Publication: 2016 Oct 26.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

IPC - Isoelectric Point Calculator.

Authors: Kozlowski LP; Kielce, 25-430, Poland. lukasz.kozlowski.lpk@gmail.com.

Source: Biology direct [Biol Direct] 2016 Oct 21; Vol. 11 (1), pp. 55. Date of Electronic Publication: 2016 Oct 21.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101258412 Publication Model: Electronic Cited Medium: Internet ISSN: 1745-6150 (Electronic) Linking ISSN: 17456150 NLM ISO Abbreviation: Biol Direct Subsets: MEDLINE

GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function.

Authors: Pietal MJ Bujnicki JM Kozlowski LP

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2015 Nov 01; Vol. 31 (21), pp. 3499-505. Date of Electronic Publication: 2015 Jun 30.

Publication Type: Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Biochemical Characterization and Validation of a Catalytic Site of a Highly Thermostable Ts2631 Endolysin from the Thermus scotoductus Phage vB_Tsc2631.

Authors: Plotka M Kaczorowska AK Morzywolek A et al.

Source: PloS one [PLoS One] 2015 Sep 16; Vol. 10 (9), pp. e0137374. Date of Electronic Publication: 2015 Sep 16 (Print Publication: 2015).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Going to extremes - a metagenomic journey into the dark matter of life.

Authors: Aevarsson A Kaczorowska AK Adalsteinsson BT et al.

Source: FEMS microbiology letters [FEMS Microbiol Lett] 2021 Jun 24; Vol. 368 (12).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 7705721 Publication Model: Print Cited Medium: Internet ISSN: 1574-6968 (Electronic) Linking ISSN: 03781097 NLM ISO Abbreviation: FEMS Microbiol Lett Subsets: MEDLINE

Female-specific gene expression in dioecious liverwort Pellia endiviifolia is developmentally regulated and connected to archegonia production.

Authors: Sierocka I Kozlowski LP Bujnicki JM et al.

Source: BMC plant biology [BMC Plant Biol] 2014 Jun 17; Vol. 14, pp. 168. Date of Electronic Publication: 2014 Jun 17.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100967807 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2229 (Electronic) Linking ISSN: 14712229 NLM ISO Abbreviation: BMC Plant Biol Subsets: MEDLINE

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction.

Authors: Puton T Kozlowski LP Rother KM et al.

Source: Nucleic acids research [Nucleic Acids Res] 2014 Apr; Vol. 42 (8), pp. 5403-6. Date of Electronic Publication: 2014 Mar 18.

Publication Type: Letter; Published Erratum

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction.

Authors: Puton T Kozlowski LP Rother KM et al.

Source: Nucleic acids research [Nucleic Acids Res] 2013 Apr; Vol. 41 (7), pp. 4307-23. Date of Electronic Publication: 2013 Feb 21.

Publication Type: Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins.

Authors: Kozlowski LP Bujnicki JM

Source: BMC bioinformatics [BMC Bioinformatics] 2012 May 24; Vol. 13, pp. 111. Date of Electronic Publication: 2012 May 24.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Structure and function of the Ts2631 endolysin of Thermus scotoductus phage vB_Tsc2631 with unique N-terminal extension used for peptidoglycan binding.

Authors: Plotka M Sancho-Vaello E Dorawa S et al.

Source: Scientific reports [Sci Rep] 2019 Feb 04; Vol. 9 (1), pp. 1261. Date of Electronic Publication: 2019 Feb 04.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

Computational modeling of protein-RNA complex structures.

Authors: Tuszynska I Matelska D Magnus M et al.

Source: Methods (San Diego, Calif.) [Methods] 2014 Feb; Vol. 65 (3), pp. 310-9. Date of Electronic Publication: 2013 Sep 29.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Review

Journal Info: Publisher: Academic Press Country of Publication: United States NLM ID: 9426302 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9130 (Electronic) Linking ISSN: 10462023 NLM ISO Abbreviation: Methods Subsets: MEDLINE