Search Results - "Luber, Jacob"

Wavelength-Dependent Calcium Signaling Response to Photobiomodulation in Pancreatic Cells.

Authors: Fowlds, Kelli Alsup, Anne M. Kunwar, Abhidha et al.

Source: Photonics; Feb2025, Vol. 12 Issue 2, p99, 15p

scRNA-seq Reveals Novel Genetic Pathways and Sex Chromosome Regulation in Tribolium Spermatogenesis.

Authors: Robben, Michael Ramesh, Balan Pau, Shana et al.

Source: Genome Biology & Evolution; Mar2024, Vol. 16 Issue 3, p1-14, 14p

Machine Learning-Driven Prediction of Spatiotemporal Dynamics of Active Nuclei During Drosophila Embryogenesis.

Authors: Malidarreh, Parisa Boodaghi Borad, Priyanshi Rout, Biraaj et al.

Source: International Journal of Molecular Sciences. Nov2025, Vol. 26 Issue 21, p10338. 13p.

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A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type.

Authors: Le Goallec, Alan Tierney, Braden T. Luber, Jacob M. et al.

Source: PLoS Computational Biology. 5/11/2020, Vol. 16 Issue 5, p1-21. 21p. 1 Diagram, 1 Chart, 3 Graphs.

Single-cell RNA-seq reveals disease-specific CD8+ T cell clonal expansion and a high frequency of transcriptionally distinct double-negative T cells in diabetic NOD mice.

Authors: Islam, Md Zohorul Zimmerman, Sam Lindahl, Alexis et al.

Source: PLoS ONE. 3/19/2025, Vol. 20 Issue 3, p1-24. 24p.

Su(H) Modulates Enhancer Transcriptional Bursting in Prelude to Gastrulation.

Authors: Fenelon, Kelli D. Borad, Priyanshi Rout, Biraaj et al.

Source: Cells (2073-4409). Nov2024, Vol. 13 Issue 21, p1759. 12p.

Systems Interrogation of Host-Microbiome Immunomodulation and Metabolism

Authors: Luber, Jacob Mayne

Committee Members: Singer, Meromit; Kissler, Stephan; Ordovas-Montanes, Jose; Moffitt, Jeffrey; Langille, Morgan

URL: https://nrs.harvard.edu/URN-3:HUL.INSTREPOS:37368931

BetaBuddy: An automated end-to-end computer vision pipeline for analysis of calcium fluorescence dynamics in β-cells.

Authors: Alsup, Anne M. Fowlds, Kelli Cho, Michael et al.

Source: PLoS ONE. 3/15/2024, Vol. 19 Issue 3, p1-16. 16p.

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Comparison of the Strengths and Weaknesses of Machine Learning Algorithms and Feature Selection on KEGG Database Microbial Gene Pathway Annotation and Its Effects on Reconstructed Network Topology.

Authors: Robben, Michael Nasr, Mohammad Sadegh Das, Avishek et al.

Source: Journal of Computational Biology. Jul2023, Vol. 30 Issue 7, p766-782. 17p.

PD-1 regulates tumor-infiltrating CD8+ T cells in both a cell-intrinsic and a cell-extrinsic fashion.

Authors: Pauken KE Markson SC Conway TS et al.

Source: The Journal of experimental medicine [J Exp Med] 2025 Oct 06; Vol. 222 (10). Date of Electronic Publication: 2025 Jul 24.

Publication Type: Journal Article

Journal Info: Publisher: Rockefeller University Press Country of Publication: United States NLM ID: 2985109R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1540-9538 (Electronic) Linking ISSN: 00221007 NLM ISO Abbreviation: J Exp Med Subsets: MEDLINE

Generalizability of PGS313 for breast cancer risk in a Los Angeles biobank.

Authors: Shang H Ding Y Venkateswaran V et al.

Source: HGG advances [HGG Adv] 2024 Jul 18; Vol. 5 (3), pp. 100302. Date of Electronic Publication: 2024 May 03.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 101772885 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-2477 (Electronic) Linking ISSN: 26662477 NLM ISO Abbreviation: HGG Adv Subsets: MEDLINE

BetaBuddy: An end-to-end computer vision pipeline for the automated analysis of insulin secreting β-cells.

Authors: Alsup AM Fowlds K Cho M et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Apr 06. Date of Electronic Publication: 2023 Apr 06.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

A perfect storm: Genetics and anticommensal antibodies shore up type 1 diabetes.

Authors: Luber JM Kostic AD

Source: Science immunology [Sci Immunol] 2019 Feb 01; Vol. 4 (32).

Publication Type: Journal Article; Comment

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 101688624 Publication Model: Print Cited Medium: Internet ISSN: 2470-9468 (Electronic) Linking ISSN: 24709468 NLM ISO Abbreviation: Sci Immunol Subsets: MEDLINE

HiGlass: web-based visual exploration and analysis of genome interaction maps.

Authors: Kerpedjiev P Abdennur N Lekschas F et al.

Source: Genome biology [Genome Biol] 2018 Aug 24; Vol. 19 (1), pp. 125. Date of Electronic Publication: 2018 Aug 24.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Reconstruction of ancient microbial genomes from the human gut.

Authors: Wibowo MC Yang Z Borry M et al.

Source: Nature [Nature] 2021 Jun; Vol. 594 (7862), pp. 234-239. Date of Electronic Publication: 2021 May 12.

Publication Type: Historical Article; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Single-cell analyses identify circulating anti-tumor CD8 T cells and markers for their enrichment.

Authors: Pauken KE Shahid O Lagattuta KA et al.

Source: The Journal of experimental medicine [J Exp Med] 2021 Apr 05; Vol. 218 (4).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Rockefeller University Press Country of Publication: United States NLM ID: 2985109R Publication Model: Print Cited Medium: Internet ISSN: 1540-9538 (Electronic) Linking ISSN: 00221007 NLM ISO Abbreviation: J Exp Med Subsets: MEDLINE

Layilin augments integrin activation to promote antitumor immunity.

Authors: Mahuron KM Moreau JM Glasgow JE et al.

Source: The Journal of experimental medicine [J Exp Med] 2020 Sep 07; Vol. 217 (9).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Rockefeller University Press Country of Publication: United States NLM ID: 2985109R Publication Model: Print Cited Medium: Internet ISSN: 1540-9538 (Electronic) Linking ISSN: 00221007 NLM ISO Abbreviation: J Exp Med Subsets: MEDLINE

The Landscape of Genetic Content in the Gut and Oral Human Microbiome.

Authors: Tierney BT Yang Z Luber JM et al.

Source: Cell host & microbe [Cell Host Microbe] 2019 Aug 14; Vol. 26 (2), pp. 283-295.e8.

Publication Type: Journal Article; Meta-Analysis; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101302316 Publication Model: Print Cited Medium: Internet ISSN: 1934-6069 (Electronic) Linking ISSN: 19313128 NLM ISO Abbreviation: Cell Host Microbe Subsets: MEDLINE