Search Results - "Martin-Rufino JD"

Quantifying the spatiotemporal mechanical dynamics of engineered cardiac microbundles.

Authors: Kobeissi, Hiba DePalma, Samuel J. Jilberto, Javiera et al.

Source: PLoS Computational Biology. 7/20/2026, Vol. 22 Issue 7, p1-40. 40p.

StPedf: Cell trajectory inference of spatial transcriptomics via spatial proximity embedding and spatial density-adaptive fusion.

Authors: Zhang, Yuan Sun, Ziyan Shi, Zhixin et al.

Source: PLoS Computational Biology. 6/5/2026, Vol. 22 Issue 6, p1-27. 27p.

Expanding and improving analyses of nucleotide recoding RNA-seq experiments with the EZbakR suite.

Authors: Vock, Isaac W. Mabin, Justin W. Machyna, Martin et al.

Source: PLoS Computational Biology. 7/3/2025, Vol. 21 Issue 7, p1-21. 21p.

Inhibiting ferroptosis enhances ex vivo expansion of human haematopoietic stem cells.

Authors: Della Volpe L Lee AJ Antoszewski M et al.

Source: Nature cell biology [Nat Cell Biol] 2025 Dec; Vol. 27 (12), pp. 2214-2224. Date of Electronic Publication: 2025 Nov 18.

Publication Type: Journal Article

Journal Info: Publisher: Macmillan Magazines Ltd Country of Publication: England NLM ID: 100890575 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4679 (Electronic) Linking ISSN: 14657392 NLM ISO Abbreviation: Nat Cell Biol Subsets: MEDLINE

Exploratory trajectory inference reveals convergent lineages for CD8 T cells in chronic LCMV infection.

Authors: Schleicher, Jan T. Gupta, Revant Cerletti, Dario et al.

Source: PLoS ONE. 9/19/2025, Vol. 20 Issue 9, p1-25. 25p.

Analytical dissection of CRISPR-Cas9-mediated gene editing fidelity: integrating next-generation bioanalytical platforms for precision immunotherapeutics and rare disease correction.

Authors: Mukherjee, Arpita¹ (AUTHOR) arpitamukherjee1987@rediffmail.com

Source: Journal of Rare Diseases. 7/20/2026, Vol. 5 Issue 1, p1-23. 23p.

Dissecting reversible and irreversible single cell state transitions from gene regulatory networks.

Authors: Ramirez, Daniel A Lu, Mingyang

Source: Molecular Systems Biology. May2026, Vol. 22 Issue 5, p811-832. 22p.

STEER: decoupling kinetics with Spatial-Temporal Explainable Expert model for RNA velocity inference.

Authors: (刘志远), Zhiyuan Liu (李雅儒), Yaru Li (吴大飞), Dafei Wu et al.

Source: National Science Review. May2026, Vol. 13 Issue 9, p1-15. 15p.

A novel MECOM gene variant causes severe thrombocytopenia in a neonate: a case report and review of the literature.

Authors: Li, Jiaxin Peng, Ting Cheng, Guoqiang et al.

Source: Journal of Medical Case Reports. 4/1/2025, Vol. 19 Issue 1, p1-6. 6p.

Single‐nucleus transcriptomic profiling reveals temporal dynamics of neuroinflammation and myelin repair after intracerebral haemorrhage.

Authors: Chen, Zhan Wang, Qinglin Xiang, Rong et al.

Source: Clinical & Translational Medicine. Oct2025, Vol. 15 Issue 10, p1-21. 21p.

Storm: Incorporating transient stochastic dynamics to infer the RNA velocity with metabolic labeling information.

Authors: Peng, Qiangwei Qiu, Xiaojie Li, Tiejun

Source: PLoS Computational Biology. 11/18/2024, Vol. 20 Issue 11, p1-38. 38p.

Deciphering transcriptional bursts and enhancer dynamics: Advancing cancer therapeutics through single‐cell global run‐on sequencing.

Authors: Pan, Xiangyu Na, Feifei Chen, Xuelan

Source: Medcomm: Oncology. Sep2024, Vol. 3 Issue 3, p1-4. 4p.

Single‐cell RNA‐seq of in vitro expanded cells from cranial neural crest reveals a rare odontogenic sub‐population.

Authors: Zhao, Yifan Chen, Shubin Liu, Xiaobo et al.

Source: Cell Proliferation. Jun2024, Vol. 57 Issue 6, p1-13. 13p.

Modeling single cell trajectory using forward-backward stochastic differential equations.

Authors: Zhang, Kevin Zhu, Junhao Kong, Dehan et al.

Source: PLoS Computational Biology. 4/15/2024, Vol. 20 Issue 4, p1-25. 25p.

eNRSA: a faster and more powerful approach for nascent transcriptome analysis.

Authors: Wang, Jing Chen, Hua-chang Hiebert, Scott W et al.

Source: GigaScience. 2025, Vol. 14, p1-11. 11p.

Inferring gene regulatory network from single-cell transcriptomes with graph autoencoder model.

Authors: Wang, Jiacheng Chen, Yaojia Zou, Quan

Source: PLoS Genetics. 9/13/2023, Vol. 19 Issue 9, p1-28. 28p.

CRISPR‐based approaches for studying inborn errors of immunity.

Authors: Li, Joey H.^1,2,3 (AUTHOR) jhli@mednet.ucla.edu

Source: Clinical & Translational Medicine. Oct2024, Vol. 14 Issue 10, p1-4. 4p.

Mesenchymal stem cell therapy in eosinophilic granulomatosis with polyangiitis-related lower limb gangrene: a case report.

Authors: Wang, Hui Zhang, Qian Wu, Sensen et al.

Source: Stem Cell Research & Therapy. 9/16/2024, Vol. 15 Issue 1, p1-9. 9p.

miR-1915-3p regulates megakaryocytic and erythroid differentiation by targeting SOCS4.

Authors: Yuan, Xin Liu, Pengcong Xu, Lei et al.

Source: Thrombosis Journal. 8/9/2024, Vol. 22 Issue 1, p1-11. 11p.

Ototoxicity-induced c-Fos activation underlies the regenerative capacity of the vestibular sensory epithelia.

Authors: Zhang, Yunzhong You, Dan Che, Chenhao et al.

Source: Cell Communication & Signaling. 10/8/2025, Vol. 23 Issue 1, p1-20. 20p.