Search Results - "Merzel F"

Collagen and component polypeptides: Low frequency and amide vibrations

Authors: Fontaine-Vive, F. Merzel, F. Johnson, M.R. et al.

Source: Chemical Physics. Jan2009, Vol. 355 Issue 2/3, p141-148. 8p.

Subjects: Polypeptides, Collagen, Amides, Density functionals, Proteins, Simulation methods & models, Biomechanics, Vibrational spectra

Nonlinear diffusion in two-dimensional ordered porous media based on a free volume theory.

Authors: Godec, A. Gaberscek, M. Jamnik, J. et al.

Source: Journal of Chemical Physics. 12/21/2009, Vol. 131 Issue 23, p234106. 12p. 1 Diagram, 1 Chart, 7 Graphs.

A variational method for efficient estimation of diffusion and free-energy profiles along collective variables.

Authors: Hubman A Merzel F

Source: The Journal of chemical physics [J Chem Phys] 2026 May 07; Vol. 164 (17).

Publication Type: Journal Article

Journal Info: Publisher: American Institute of Physics Country of Publication: United States NLM ID: 0375360 Publication Model: Print Cited Medium: Internet ISSN: 1089-7690 (Electronic) Linking ISSN: 00219606 NLM ISO Abbreviation: J Chem Phys Subsets: MEDLINE; PubMed not MEDLINE

High-Throughput Human Histone Detection by an Engineered Actinoporin Nanopore.

Authors: Srnko M Šolinc G Crnković A et al.

Source: ACS sensors [ACS Sens] 2026 Mar 27; Vol. 11 (3), pp. 2016-2029. Date of Electronic Publication: 2026 Feb 20.

Publication Type: Journal Article

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101669031 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2379-3694 (Electronic) Linking ISSN: 23793694 NLM ISO Abbreviation: ACS Sens Subsets: MEDLINE

Cryo-EM structures of a protein pore reveal a cluster of cholesterol molecules and diverse roles of membrane lipids.

Authors: Šolinc G Srnko M Merzel F et al.

Source: Nature communications [Nat Commun] 2025 Mar 26; Vol. 16 (1), pp. 2972. Date of Electronic Publication: 2025 Mar 26.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Synthesis of Thiazolidin-4-Ones Derivatives, Evaluation of Conformation in Solution, Theoretical Isomerization Reaction Paths and Discovery of Potential Biological Targets.

Authors: Georgiou N Karta D Cheilari A et al.

Source: Molecules (Basel, Switzerland) [Molecules] 2024 May 23; Vol. 29 (11). Date of Electronic Publication: 2024 May 23.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 100964009 Publication Model: Electronic Cited Medium: Internet ISSN: 1420-3049 (Electronic) Linking ISSN: 14203049 NLM ISO Abbreviation: Molecules Subsets: MEDLINE

Mechanistic insight into the dynamics of Mur ligase through a comprehensive timescale-specific approach.

Authors: Ogris I Zupančič B Sosič I et al.

Source: Communications chemistry [Commun Chem] 2025 Sep 29; Vol. 8 (1), pp. 285. Date of Electronic Publication: 2025 Sep 29.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101725670 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3669 (Electronic) Linking ISSN: 23993669 NLM ISO Abbreviation: Commun Chem Subsets: PubMed not MEDLINE

Surface plasmon resonance and microscale thermophoresis approaches for determining the affinity of perforin for calcium ions.

Authors: Naneh O Kozorog M Merzel F et al.

Source: Frontiers in immunology [Front Immunol] 2023 Jul 19; Vol. 14, pp. 1181020. Date of Electronic Publication: 2023 Jul 19 (Print Publication: 2023).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE

Influence of SGLT1 Sugar Uptake Inhibitors on Water Transport.

Authors: Sever M Merzel F

Source: Molecules (Basel, Switzerland) [Molecules] 2023 Jul 08; Vol. 28 (14). Date of Electronic Publication: 2023 Jul 08.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 100964009 Publication Model: Electronic Cited Medium: Internet ISSN: 1420-3049 (Electronic) Linking ISSN: 14203049 NLM ISO Abbreviation: Molecules Subsets: MEDLINE

Expansion and Neofunctionalization of Actinoporin-like Genes in Mediterranean Mussel (Mytilus galloprovincialis).

Authors: Koritnik N Gerdol M Šolinc G et al.

Source: Genome biology and evolution [Genome Biol Evol] 2022 Nov 04; Vol. 14 (11).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101509707 Publication Model: Print Cited Medium: Internet ISSN: 1759-6653 (Electronic) Linking ISSN: 17596653 NLM ISO Abbreviation: Genome Biol Evol Subsets: MEDLINE

From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y.

Authors: Kavčič L Kežar A Koritnik N et al.

Source: Communications chemistry [Commun Chem] 2024 Jan 17; Vol. 7 (1), pp. 14. Date of Electronic Publication: 2024 Jan 17.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101725670 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3669 (Electronic) Linking ISSN: 23993669 NLM ISO Abbreviation: Commun Chem Subsets: PubMed not MEDLINE

Sub-THz acoustic excitation of protein motion.

Authors: Papež P Merzel F Praprotnik M

Source: The Journal of chemical physics [J Chem Phys] 2023 Oct 07; Vol. 159 (13).

Publication Type: Journal Article

Journal Info: Publisher: American Institute of Physics Country of Publication: United States NLM ID: 0375360 Publication Model: Print Cited Medium: Internet ISSN: 1089-7690 (Electronic) Linking ISSN: 00219606 NLM ISO Abbreviation: J Chem Phys Subsets: MEDLINE

Rotational Dynamics of a Protein under Shear Flow Studied by the Eckart Frame Formalism.

Authors: Papež P Merzel F Praprotnik M

Source: The journal of physical chemistry. B [J Phys Chem B] 2023 Aug 24; Vol. 127 (33), pp. 7231-7243. Date of Electronic Publication: 2023 Aug 09.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101157530 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-5207 (Electronic) Linking ISSN: 15205207 NLM ISO Abbreviation: J Phys Chem B Subsets: MEDLINE

Water-Aluminum Interaction as Driving Force of Linde Type A Aluminophosphate Hydration.

Authors: Hubman A Volavšek J Urbič T et al.

Source: Nanomaterials (Basel, Switzerland) [Nanomaterials (Basel)] 2023 Aug 22; Vol. 13 (17). Date of Electronic Publication: 2023 Aug 22.

Publication Type: Journal Article

Journal Info: Publisher: MDPI AG Country of Publication: Switzerland NLM ID: 101610216 Publication Model: Electronic Cited Medium: Print ISSN: 2079-4991 (Print) Linking ISSN: 20794991 NLM ISO Abbreviation: Nanomaterials (Basel) Subsets: PubMed not MEDLINE

Collective Domain Motion Facilitates Water Transport in SGLT1.

Authors: Sever M Merzel F

Source: International journal of molecular sciences [Int J Mol Sci] 2023 Jun 23; Vol. 24 (13). Date of Electronic Publication: 2023 Jun 23.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

Molecular Dynamics-Derived Pharmacophore Model Explaining the Nonselective Aspect of KV10.1 Pore Blockers.

Authors: Toplak Ž Merzel F Pardo LA et al.

Source: International journal of molecular sciences [Int J Mol Sci] 2021 Aug 20; Vol. 22 (16). Date of Electronic Publication: 2021 Aug 20.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

Evaluation of Selected CYP51A1 Polymorphisms in View of Interactions with Substrate and Redox Partner.

Authors: Režen T Ogris I Sever M et al.

Source: Frontiers in pharmacology [Front Pharmacol] 2017 Jun 30; Vol. 8, pp. 417. Date of Electronic Publication: 2017 Jun 30 (Print Publication: 2017).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Media] Country of Publication: Switzerland NLM ID: 101548923 Publication Model: eCollection Cited Medium: Print ISSN: 1663-9812 (Print) Linking ISSN: 16639812 NLM ISO Abbreviation: Front Pharmacol Subsets: PubMed not MEDLINE

Endogenous modulators of neurotrophin signaling: Landscape of the transient ATP-NGF interactions.

Authors: Paoletti F Merzel F Cassetta A et al.

Source: Computational and structural biotechnology journal [Comput Struct Biotechnol J] 2021 May 07; Vol. 19, pp. 2938-2949. Date of Electronic Publication: 2021 May 07 (Print Publication: 2021).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology Country of Publication: Netherlands NLM ID: 101585369 Publication Model: eCollection Cited Medium: Print ISSN: 2001-0370 (Print) Linking ISSN: 20010370 NLM ISO Abbreviation: Comput Struct Biotechnol J Subsets: PubMed not MEDLINE

Decoupling between the translation and rotation of water in the proximity of a protein molecule.

Authors: Tan P Huang J Mamontov E et al.

Source: Physical chemistry chemical physics : PCCP [Phys Chem Chem Phys] 2020 Aug 24; Vol. 22 (32), pp. 18132-18140.

Publication Type: Journal Article

Journal Info: Publisher: Royal Society of Chemistry Country of Publication: England NLM ID: 100888160 Publication Model: Print Cited Medium: Internet ISSN: 1463-9084 (Electronic) Linking ISSN: 14639076 NLM ISO Abbreviation: Phys Chem Chem Phys Subsets: MEDLINE

The amide III vibrational circular dichroism band as a probe to detect conformational preferences of alanine dipeptide in water.

Authors: Mirtič A Merzel F Grdadolnik J

Source: Biopolymers [Biopolymers] 2014 Jul; Vol. 101 (7), pp. 814-8.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Wiley Country of Publication: United States NLM ID: 0372525 Publication Model: Print Cited Medium: Internet ISSN: 1097-0282 (Electronic) Linking ISSN: 00063525 NLM ISO Abbreviation: Biopolymers Subsets: MEDLINE