Search Results - "Modos, D."

Functional Impact of Non-Coding SNPs in Ulcerative Colitis Revealed using Patient-Specific Network Modelling.

Authors: Liu, Y. Thomas, J. P. Modos, D. et al.

Source: Journal of Crohn's & Colitis. 2026 Supplement, Vol. 20, pi778-i779. 2p.

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Decoding cytokine networks in ulcerative colitis to identify pathogenic mechanisms and therapeutic targets.

Authors: Olbei M Hautefort I Thomas JP et al.

Source: Science signaling [Sci Signal] 2026 Feb 03; Vol. 19 (923), pp. eadt0986. Date of Electronic Publication: 2026 Feb 03.

Publication Type: Journal Article

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 101465400 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1937-9145 (Electronic) Linking ISSN: 19450877 NLM ISO Abbreviation: Sci Signal Subsets: MEDLINE

Deciphering the microbiome-metabolome landscape of an inflammatory bowel disease inception cohort.

Authors: Radhakrishnan ST Mullish BH Olbei ML et al.

Source: Gut microbes [Gut Microbes] 2025 Dec; Vol. 17 (1), pp. 2527863. Date of Electronic Publication: 2025 Jul 18.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: United States NLM ID: 101495343 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1949-0984 (Electronic) Linking ISSN: 19490976 NLM ISO Abbreviation: Gut Microbes Subsets: MEDLINE

From Single Cytokines to Networks: A Systems Immunology View of Ulcerative Colitis.

Authors: Olbei M Thomas JP Korcsmaros T et al.

Source: DNA and cell biology [DNA Cell Biol] 2026 Jul 21, pp. 10445498261470548. Date of Electronic Publication: 2026 Jul 21.

Publication Type: Journal Article; Review

Journal Info: Publisher: Mary Ann Liebert Country of Publication: United States NLM ID: 9004522 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-7430 (Electronic) Linking ISSN: 10445498 NLM ISO Abbreviation: DNA Cell Biol Subsets: MEDLINE

A historical journey of metabolite-protein interaction discovery: from data harmonization to AI-driven prediction.

Authors: Lawrence T Mocsonokyova E Barde AM et al.

Source: Briefings in bioinformatics [Brief Bioinform] 2026 Jul 03; Vol. 27 (4).

Publication Type: Journal Article; Review; Historical Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

Patient-Specific Regulatory Network Rewiring in Inflammatory Bowel Disease: How Genetic Polymorphisms Divert Incoming Signals and Contribute to Disease Pathogenesis.

Authors: Bohar B Thomas JP Liu Y et al.

Source: Inflammatory bowel diseases [Inflamm Bowel Dis] 2025 Oct 01; Vol. 31 (10), pp. 2665-2680.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9508162 Publication Model: Print Cited Medium: Internet ISSN: 1536-4844 (Electronic) Linking ISSN: 10780998 NLM ISO Abbreviation: Inflamm Bowel Dis Subsets: MEDLINE

Protocol for predicting host-microbe interactions and their downstream effect on host cells using MicrobioLink.

Authors: Gul L Elias AJ Tambaku T et al.

Source: STAR protocols [STAR Protoc] 2025 Mar 21; Vol. 6 (1), pp. 103570. Date of Electronic Publication: 2025 Jan 17.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101769501 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-1667 (Electronic) Linking ISSN: 26661667 NLM ISO Abbreviation: STAR Protoc Subsets: MEDLINE

A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis.

Authors: Brooks-Warburton J Modos D Sudhakar P et al.

Source: Nature communications [Nat Commun] 2022 Apr 28; Vol. 13 (1), pp. 2299. Date of Electronic Publication: 2022 Apr 28.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Analysing miRNA-Target Gene Networks in Inflammatory Bowel Disease and Other Complex Diseases Using Transcriptomic Data.

Authors: Thomas JP Ölbei M Brooks-Warburton J et al.

Source: Genes [Genes (Basel)] 2022 Feb 18; Vol. 13 (2). Date of Electronic Publication: 2022 Feb 18.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE

The Emerging Role of Bile Acids in the Pathogenesis of Inflammatory Bowel Disease.

Authors: Thomas JP Modos D Rushbrook SM et al.

Source: Frontiers in immunology [Front Immunol] 2022 Feb 03; Vol. 13, pp. 829525. Date of Electronic Publication: 2022 Feb 03 (Print Publication: 2022).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Review

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE

COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.

Authors: Ostaszewski M Niarakis A Mazein A et al.

Corporate Authors: Ostaszewski M Niarakis A Mazein A et al.

Source: Molecular systems biology [Mol Syst Biol] 2021 Dec; Vol. 17 (12), pp. e10851.

Publication Type: Published Erratum

Journal Info: Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE; PubMed not MEDLINE

Network Biology Approaches to Achieve Precision Medicine in Inflammatory Bowel Disease.

Authors: Thomas JP Modos D Korcsmaros T et al.

Source: Frontiers in genetics [Front Genet] 2021 Oct 21; Vol. 12, pp. 760501. Date of Electronic Publication: 2021 Oct 21 (Print Publication: 2021).

Publication Type: Journal Article; Review

Journal Info: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101560621 Publication Model: eCollection Cited Medium: Print ISSN: 1664-8021 (Print) Linking ISSN: 16648021 NLM ISO Abbreviation: Front Genet Subsets: PubMed not MEDLINE

COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.

Authors: Ostaszewski M Niarakis A Mazein A et al.

Corporate Authors: Ostaszewski M Niarakis A Mazein A et al.

Source: Molecular systems biology [Mol Syst Biol] 2021 Oct; Vol. 17 (10), pp. e10387.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE

SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients.

Authors: Olbei M Hautefort I Modos D et al.

Source: Frontiers in immunology [Front Immunol] 2021 Mar 01; Vol. 12, pp. 629193. Date of Electronic Publication: 2021 Mar 01 (Print Publication: 2021).

Publication Type: Research Support, Non-U.S. Gov't; Systematic Review; Journal Article

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways.

Authors: Treveil A Bohar B Sudhakar P et al.

Source: PLoS computational biology [PLoS Comput Biol] 2021 Feb 03; Vol. 17 (2), pp. e1008685. Date of Electronic Publication: 2021 Feb 03 (Print Publication: 2021).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways.

Authors: Poletti M Treveil A Csabai L et al.

Source: NPJ systems biology and applications [NPJ Syst Biol Appl] 2022 May 02; Vol. 8 (1), pp. 15. Date of Electronic Publication: 2022 May 02.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group in partnership with SBI, The Systems Biology Institute Country of Publication: England NLM ID: 101677786 Publication Model: Electronic Cited Medium: Internet ISSN: 2056-7189 (Electronic) Linking ISSN: 20567189 NLM ISO Abbreviation: NPJ Syst Biol Appl Subsets: MEDLINE

Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell-type specific manner that are altered in inflammatory bowel disease.

Authors: Gul L Modos D Fonseca S et al.

Source: Journal of extracellular vesicles [J Extracell Vesicles] 2022 Jan; Vol. 11 (1), pp. e12189.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Wiley Country of Publication: United States NLM ID: 101610479 Publication Model: Print Cited Medium: Internet ISSN: 2001-3078 (Electronic) Linking ISSN: 20013078 NLM ISO Abbreviation: J Extracell Vesicles Subsets: MEDLINE

A handy meta-analysis tool for IBD research.

Authors: Modos D Thomas JP Korcsmaros T

Source: Nature computational science [Nat Comput Sci] 2021 Sep; Vol. 1 (9), pp. 571-572.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: United States NLM ID: 101775476 Publication Model: Print Cited Medium: Internet ISSN: 2662-8457 (Electronic) Linking ISSN: 26628457 NLM ISO Abbreviation: Nat Comput Sci Subsets: MEDLINE; PubMed not MEDLINE

CytokineLink: A Cytokine Communication Map to Analyse Immune Responses-Case Studies in Inflammatory Bowel Disease and COVID-19.

Authors: Olbei M Thomas JP Hautefort I et al.

Source: Cells [Cells] 2021 Aug 29; Vol. 10 (9). Date of Electronic Publication: 2021 Aug 29.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101600052 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4409 (Electronic) Linking ISSN: 20734409 NLM ISO Abbreviation: Cells Subsets: MEDLINE