Search Results - "Opulente DA"

Machine learning identifies novel signatures of antifungal drug resistance in Saccharomycotina yeasts.

Authors: Harrison MC Rinker DC LaBella AL et al.

Source: PLoS genetics [PLoS Genet] 2026 Mar 17; Vol. 22 (3), pp. e1012091. Date of Electronic Publication: 2026 Mar 17 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE

Stable Hypermutators Revealed by the Genomic Landscape of Genes Involved in Genome Stability Among Yeast Species.

Authors: Gonçalves C Steenwyk JL Rinker DC et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2025 Oct 29; Vol. 42 (11).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage.

Authors: Feng B Li Y Xu B et al.

Source: Molecular systems biology [Mol Syst Biol] 2025 Aug; Vol. 21 (8), pp. 1066-1089. Date of Electronic Publication: 2025 May 27.

Publication Type: Journal Article

Journal Info: Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE

Taxogenomic Analysis of a Novel Yeast Species, Lachancea rosae Sp. Nov. F.A., Isolated From the Wild Rose Rosa californica.

Authors: Bajgain Y Langdon QK Krien CM et al.

Source: Yeast (Chichester, England) [Yeast] 2025 Nov; Vol. 42 (11), pp. 213-221. Date of Electronic Publication: 2025 Sep 01.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Wiley Country of Publication: England NLM ID: 8607637 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0061 (Electronic) Linking ISSN: 0749503X NLM ISO Abbreviation: Yeast Subsets: MEDLINE

Exploring Saccharomycotina Yeast Ecology Through an Ecological Ontology Framework.

Authors: Harrison MC Opulente DA Wolters JF et al.

Source: Yeast (Chichester, England) [Yeast] 2024 Oct; Vol. 41 (10), pp. 615-628. Date of Electronic Publication: 2024 Sep 18.

Publication Type: Journal Article; Review; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Wiley Country of Publication: England NLM ID: 8607637 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0061 (Electronic) Linking ISSN: 0749503X NLM ISO Abbreviation: Yeast Subsets: MEDLINE

Diverse signatures of convergent evolution in cactus-associated yeasts.

Authors: Gonçalves C Harrison MC Steenwyk JL et al.

Source: PLoS biology [PLoS Biol] 2024 Sep 23; Vol. 22 (9), pp. e3002832. Date of Electronic Publication: 2024 Sep 23 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

Genomic factors limiting the diversity of Saccharomycotina plant pathogens.

Authors: Lee S West C Opulente DA et al.

Source: G3 (Bethesda, Md.) [G3 (Bethesda)] 2025 Oct 08; Vol. 15 (10).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101566598 Publication Model: Print Cited Medium: Internet ISSN: 2160-1836 (Electronic) Linking ISSN: 21601836 NLM ISO Abbreviation: G3 (Bethesda) Subsets: MEDLINE

Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts.

Authors: Opulente DA LaBella AL Harrison MC et al.

Source: Science (New York, N.Y.) [Science] 2024 Apr 26; Vol. 384 (6694), pp. eadj4503. Date of Electronic Publication: 2024 Apr 26.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon.

Authors: Sun L David KT Wolters JF et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2024 Apr 02; Vol. 41 (4).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

Taxogenomic analysis of a novel yeast species isolated from soil, Pichia galeolata sp. nov.

Authors: Opulente DA Langdon QK Jarzyna M et al.

Source: Yeast (Chichester, England) [Yeast] 2023 Dec; Vol. 40 (12), pp. 608-615. Date of Electronic Publication: 2023 Nov 03.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Wiley Country of Publication: England NLM ID: 8607637 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0061 (Electronic) Linking ISSN: 0749503X NLM ISO Abbreviation: Yeast Subsets: MEDLINE

Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts.

Authors: David KT Schraiber JG Crandall JG et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2025 Jun 10; Vol. 122 (23), pp. e2500165122. Date of Electronic Publication: 2025 Jun 03.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

A taxogenomic view of the genus Torulaspora: an expansion from ten to twenty-two species.

Authors: Silva MR Paraíso F Al-Oboudi J et al.

Source: Persoonia [Persoonia] 2025 Jun; Vol. 54, pp. 265-283. Date of Electronic Publication: 2025 May 23.

Publication Type: Journal Article

Journal Info: Publisher: Naturalis Biodiversity Center in association with Westerdijk Fungal Biodiversity Institute Country of Publication: Netherlands NLM ID: 19540520R Publication Model: Print-Electronic Cited Medium: Print ISSN: 0031-5850 (Print) Linking ISSN: 00315850 NLM ISO Abbreviation: Persoonia Subsets: PubMed not MEDLINE

Machine learning identifies novel signatures of antifungal drug resistance in Saccharomycotina yeasts.

Authors: Harrison MC Rinker DC LaBella AL et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 May 10. Date of Electronic Publication: 2025 May 10.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Codon Optimization Improves the Prediction of Xylose Metabolism from Gene Content in Budding Yeasts.

Authors: Nalabothu RL Fisher KJ LaBella AL et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2023 Jun 01; Vol. 40 (6).

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

Stable hypermutators revealed by the genomic landscape of DNA repair genes among yeast species.

Authors: Gonçalves C Steenwyk JL Rinker DC et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Mar 17. Date of Electronic Publication: 2025 Mar 17.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Genomic factors limiting the diversity of Saccharomycotina plant pathogens.

Authors: Lee S West C Opulente DA et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Feb 28. Date of Electronic Publication: 2025 Feb 28.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Genomic factors shaping codon usage across the Saccharomycotina subphylum.

Authors: Zavala B Dineen L Fisher KJ et al.

Source: G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Nov 06; Vol. 14 (11).

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101566598 Publication Model: Print Cited Medium: Internet ISSN: 2160-1836 (Electronic) Linking ISSN: 21601836 NLM ISO Abbreviation: G3 (Bethesda) Subsets: MEDLINE

Substrate, temperature, and geographical patterns among nearly 2000 natural yeast isolates.

Authors: Spurley WJ Fisher KJ Langdon QK et al.

Source: Yeast (Chichester, England) [Yeast] 2022 Jan; Vol. 39 (1-2), pp. 55-68. Date of Electronic Publication: 2021 Nov 15.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Wiley Country of Publication: England NLM ID: 8607637 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0061 (Electronic) Linking ISSN: 0749503X NLM ISO Abbreviation: Yeast Subsets: MEDLINE

Correction: Variation and selection on codon usage bias across an entire subphylum.

Authors: LaBella AL Opulente DA Steenwyk JL et al.

Source: PLoS genetics [PLoS Genet] 2021 Sep 27; Vol. 17 (9), pp. e1009824. Date of Electronic Publication: 2021 Sep 27 (Print Publication: 2021).

Publication Type: Published Erratum

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE; PubMed not MEDLINE

Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade.

Authors: David KT Schraiber JG Crandall JG et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Jul 23. Date of Electronic Publication: 2024 Jul 23.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE