Search Results - "Parallel algorithms"

Fast Association Recovery in High Dimensions by Parallel Learning.

Authors: Dong, Ruipeng Wen, Canhong

Source: INFORMS Journal on Computing. May/Jun2026, Vol. 38 Issue 3, p982-997. 16p.

ReadChop: a high-performance demultiplexer for long-read sequencing data.

Authors: Jiang C Xiong Y

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Jun 01; Vol. 42 (6).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

BINSEQ: A family of high-performance binary formats for nucleotide sequences.

Authors: Teyssier N Dobin A

Source: PLoS computational biology [PLoS Comput Biol] 2026 May 28; Vol. 22 (5), pp. e1014181. Date of Electronic Publication: 2026 May 28 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Cache-efficient and vectorized parallel dynamic programming for RNA folding.

Authors: Gruzewski M Palkowski M

Source: PloS one [PLoS One] 2026 May 20; Vol. 21 (5), pp. e0349146. Date of Electronic Publication: 2026 May 20 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Umi-pipeline-nf: a modular and scalable workflow for UMI-tagged nanopore amplicon analysis with real-time sequencing integration and GPU-acceleration.

Authors: Amstler S Forer L Escherich L et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Apr 07; Vol. 42 (4).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

PH-SHOWOA: Parallel hybrid SHO-WOA for VRPSPDTW.

Authors: Nguyen T Vaclav S Vo B et al.

Source: PloS one [PLoS One] 2026 Mar 27; Vol. 21 (3), pp. e0343262. Date of Electronic Publication: 2026 Mar 27 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Loop parallelization in source code for internet of things computing using hybrid heuristic algorithm.

Authors: Arasteh B Sefati SS Kusetogullari H et al.

Source: PloS one [PLoS One] 2026 Mar 27; Vol. 21 (3), pp. e0341059. Date of Electronic Publication: 2026 Mar 27 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Accelerating mesh-based Monte Carlo simulations using contemporary graphics ray-tracing hardware.

Authors: Yan S Dwyer D Kaeli DR et al.

Source: Journal of biomedical optics [J Biomed Opt] 2026 Mar; Vol. 31 (3), pp. 035002. Date of Electronic Publication: 2026 Mar 18.

Publication Type: Journal Article

Journal Info: Publisher: Published by SPIE--the International Society for Optical Engineering in cooperation with International Biomedical Optics Society Country of Publication: United States NLM ID: 9605853 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1560-2281 (Electronic) Linking ISSN: 10833668 NLM ISO Abbreviation: J Biomed Opt Subsets: MEDLINE

Accelerating minimap2 for whole-genome alignment.

Authors: Chandra G Vasimuddin M Misra S et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Feb 28; Vol. 42 (3).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Performance evaluation of GPU-based parallel sorting algorithms.

Authors: Ala'anzy MA Tolendi N Baubek B et al.

Source: PloS one [PLoS One] 2026 Feb 03; Vol. 21 (2), pp. e0342167. Date of Electronic Publication: 2026 Feb 03 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Bit-reproducible parallel phylogenetic tree inference.

Authors: Stelz C Hübner L Stamatakis A

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Feb 03; Vol. 42 (2).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Optimized N-deque partition dual-deque merge string sorting algorithm.

Authors: Ketchaya, Sirilak Rattanatranurak, Apisit

Source: Scientific Reports. 6/15/2026, Vol. 16 Issue 1, p1-15. 15p.

A Parallel Krylov Subspace Iterative Scheme for Variable-Order Fractional Advection–Diffusion–Reaction Equation.

Authors: Salama, Fouad Mohammad¹ (AUTHOR)

Source: Fractal & Fractional. Jun2026, Vol. 10 Issue 6, p378. 25p.

Yet another algorithm for maximal clique enumeration problem.

Authors: El Abidine Bouneb, Zine¹ (AUTHOR) bouneb.zineabidine@univ-oeb.dz

Source: Discrete Mathematics, Algorithms & Applications. Jun2026, Vol. 18 Issue 5, p1-14. 14p.

Enhanced Integer Factorization Method: Sequential and Parallel Approaches.

Authors: Alnfrawy, Ehab T. Bahig, Hazem M. Bahig, Hatem M. et al.

Source: Symmetry (20738994). May2026, Vol. 18 Issue 5, p780. 14p.

New Mathematics for Computer Performance: Array Algebra and Cost Functions.

Authors: Hains, Gaétan Mullin, Lenore

Source: Mathematics (2227-7390). May2026, Vol. 14 Issue 9, p1479. 33p.

Feasibility of a Parallel Imaging Approach Exploiting Correlations in k-t Space for the Acceleration of ¹H Magnetic Resonance Spectroscopic Imaging.

Authors: Weygand J; Division of Global Radiation Oncology, Department of Radiation Oncology and Applied Sciences, Dartmouth-Hitchcock Medical Center, Lebanon, New Hampshire, USA.; Division of Medical Physics in Radiology, German Cancer Research Center, Heidelberg, Germany.

Source: NMR in biomedicine [NMR Biomed] 2026 Jul; Vol. 39 (7), pp. e70328.

Publication Type: Journal Article

Journal Info: Publisher: Wiley Country of Publication: England NLM ID: 8915233 Publication Model: Print Cited Medium: Internet ISSN: 1099-1492 (Electronic) Linking ISSN: 09523480 NLM ISO Abbreviation: NMR Biomed Subsets: MEDLINE

GeneTEK: Low-power and high-performance FPGA scalable architecture for exact unit-cost edit distance.

Authors: Espinosa E Rodríguez Álvarez R Miranda J et al.

Source: Computers in biology and medicine [Comput Biol Med] 2026 Jul 01; Vol. 210, pp. 111709. Date of Electronic Publication: 2026 May 02.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 1250250 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0534 (Electronic) Linking ISSN: 00104825 NLM ISO Abbreviation: Comput Biol Med Subsets: MEDLINE

Accelign: a GPU-based library for accelerating pairwise sequence alignment.

Authors: Kallenborn F Dabbaghie F Steinegger M et al.

Source: BMC bioinformatics [BMC Bioinformatics] 2026 Jun 21; Vol. 27 (1). Date of Electronic Publication: 2026 Jun 21.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Spiking Neural Membrane Systems with Multiplexed Neurons for Enhanced Parallel Computing.

Authors: Wang L Liu X Zhao Y

Source: International journal of neural systems [Int J Neural Syst] 2026 Jun; Vol. 36 (6), pp. 2650013. Date of Electronic Publication: 2026 Jan 26.

Publication Type: Journal Article

Journal Info: Publisher: World Scientific Pub. Co Country of Publication: Singapore NLM ID: 9100527 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1793-6462 (Electronic) Linking ISSN: 01290657 NLM ISO Abbreviation: Int J Neural Syst Subsets: MEDLINE