Search Results - "Pierre Baldi"

DNA Microarrays and Gene Expression : From Experiments to Data Analysis and Modeling

Authors: Pierre Baldi G. Wesley Hatfield

Resource Type: eBook.

Subjects: DNA microarrays, Gene expression

Categories: SCIENCE / Life Sciences / Genetics & Genomics

The Shattered Self : The End of Natural Evolution

Authors: Pierre Baldi

Resource Type: eBook.

Subjects: Human genome, Genetic engineering, Genetic engineering--Moral and ethical aspects, Bioethics

Categories: MEDICAL / Ethics, SCIENCE / Life Sciences / Genetics & Genomics, SCIENCE / Life Sciences / Molecular Biology

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When is Chemical Similarity Significant? The Statistical Distribution of Chemical Similarity Scores and Its Extreme Values.

Authors: Pierre Baldi Ramzi Nasr

Source: Journal of Chemical Information & Modeling. Jul2010, Vol. 50 Issue 7, p1205-1222. 18p.

Subjects: Distribution (Probability theory), Gaussian distribution, Extreme value theory, Random variables, Intersection theory, Weibull distribution

No Electron Left Behind: A Rule-Based Expert System To Predict Chemical Reactions and Reaction Mechanisms.

Authors: Jonathan H. Chen Pierre Baldi

Source: Journal of Chemical Information & Modeling. Sep2009, Vol. 49 Issue 9, p2034-2043. 10p.

Subjects: Chemical reactions, Organic reaction mechanisms, Electrons, Computer assisted research, Drug design, Drug development

An Intersection Inequality Sharper than the Tanimoto Triangle Inequality for Efficiently Searching Large Databases.

Authors: Pierre Baldi Daniel S. Hirschberg

Source: Journal of Chemical Information & Modeling. Aug2009, Vol. 49 Issue 8, p1866-1870. 5p.

Subjects: Database searching, Mathematical inequalities, Homology theory, Similarity (Geometry), Representations of algebras, Partitions (Mathematics), Integers

Speeding Up Chemical Database Searches Using a Proximity Filter Based on the Logical Exclusive OR.

Authors: Pierre Baldi Daniel S. Hirschberg Ramzi J. Nasr

Source: Journal of Chemical Information & Modeling. Jun2008, Vol. 48 Issue 7, p1367-1378. 12p.

Subjects: Cheminformatics, Database searching, Molecular structure, Graph theory, Chemical structure, Physical & theoretical chemistry research

Mathematical Correction for Fingerprint Similarity Measures to Improve Chemical Retrieval.

Authors: S. Joshua Swamidass Pierre Baldi

Source: Journal of Chemical Information & Modeling. May2007, Vol. 47 Issue 3, p952-964. 13p.

Subjects: Cheminformatics, Defect correction methods (Numerical analysis), DNA fingerprinting, Molecular structure, Measurement errors, Algorithms, Similarity (Physics)

Bounds and Algorithms for Fast Exact Searches of Chemical Fingerprints in Linear and Sublinear Time.

Authors: S. Joshua Swamidass Pierre Baldi

Source: Journal of Chemical Information & Modeling. Mar2007, Vol. 47 Issue 2, p302-317. 16p.

Subjects: Algorithms, Molecules, Database searching, QUERY (Information retrieval system), Databases, Mathematical formulas

Influence Relevance Voting: An Accurate And Interpretable Virtual High Throughput Screening Method.

Authors: S. Joshua Swamidass Chloé-Agathe Azencott Ting-Wan Lin et al.

Source: Journal of Chemical Information & Modeling; Apr2009, Vol. 49 Issue 4, p756-766, 11p

Discovery of Power-Laws in Chemical Space.

Authors: Ryan W. Benz S. Joshua Swamidass Pierre Baldi

Source: Journal of Chemical Information & Modeling; Jun2008, Vol. 48 Issue 6, p1138-1151, 14p

One- to Four-Dimensional Kernels for Virtual Screening and the Prediction of Physical, Chemical, and Biological Properties.

Authors: Chloé-Agathe Azencott Alexandre Ksikes S. Joshua Swamidass et al.

Source: Journal of Chemical Information & Modeling; May2007, Vol. 47 Issue 3, p965-974, 10p

COBEpro: a novel system for predicting continuous B-cell epitopes.

Authors: Michael J. Sweredoski Pierre Baldi

Source: PEDS: Protein Engineering, Design & Selection. Mar2009, Vol. 22 Issue 3, p113-113. 1p.

Subjects: Epitopes, Antigens, Vaccination, Preventive medicine

Data structures and compression algorithms for genomic sequence data.

Authors: Marty C. Brandon Douglas C. Wallace Pierre Baldi

Source: Bioinformatics; Jul2009, Vol. 25 Issue 14, p1731-1731, 1p

MotifMap: a human genome-wide map of candidate regulatory motif sites.

Authors: Xiaohui Xie Paul Rigor Pierre Baldi

Source: Bioinformatics; Jan2009, Vol. 25 Issue 2, p167-167, 1p

BLASTing small molecules--statistics and extreme statistics of chemical similarity scores.

Authors: Pierre Baldi Ryan W. Benz

Source: Bioinformatics; Jul2008, Vol. 24 Issue 13, pi357-i357, 1p

PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure.

Authors: Michael J. Sweredoski Pierre Baldi

Source: Bioinformatics; Jun2008, Vol. 24 Issue 12, p1459-1460, 1p

TMBpro: secondary structure, {beta}-contact and tertiary structure prediction of transmembrane {beta}-barrel proteins.

Authors: Arlo Randall Jianlin Cheng Michael Sweredoski et al.

Source: Bioinformatics; Feb2008, Vol. 24 Issue 4, p513-513, 1p

Minimizing the overlap problem in protein NMR: a computational framework for precision amino acid labeling.

Authors: Michael J. Sweredoski Kevin J. Donovan Bao D. Nguyen et al.

Source: Bioinformatics; Nov2007, Vol. 23 Issue 21, p2829-2829, 1p

ChemDB update full-text search and virtual chemical space.

Authors: Jonathan H. Chen Erik Linstead S. Joshua Swamidass et al.

Source: Bioinformatics; Sep2007, Vol. 23 Issue 17, p2348-2348, 1p