Search Results - "Piomponi V"

Unique conformational dynamics and protein recognition of A-to-I hyper-edited dsRNA.

Authors: Müller-Hermes C Piomponi V Hilber S et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Jun 20; Vol. 53 (12).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Evolutionary Constraints Guide AlphaFold2 in Predicting Alternative Conformations and Inform Rational Mutation Design.

Authors: Piomponi V Cazzaniga A Cuturello F

Source: Journal of chemical information and modeling [J Chem Inf Model] 2025 Sep 22; Vol. 65 (18), pp. 9459-9468. Date of Electronic Publication: 2025 Sep 03.

Publication Type: Journal Article

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101230060 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-960X (Electronic) Linking ISSN: 15499596 NLM ISO Abbreviation: J Chem Inf Model Subsets: MEDLINE

MDRefine: A Python package for refining molecular dynamics trajectories with experimental data.

Authors: Gilardoni I Piomponi V Fröhlking T et al.

Source: The Journal of chemical physics [J Chem Phys] 2025 May 21; Vol. 162 (19).

Publication Type: Journal Article

Journal Info: Publisher: American Institute of Physics Country of Publication: United States NLM ID: 0375360 Publication Model: Print Cited Medium: Internet ISSN: 1089-7690 (Electronic) Linking ISSN: 00219606 NLM ISO Abbreviation: J Chem Phys Subsets: MEDLINE; PubMed not MEDLINE

Molecular Simulations to Investigate the Impact of N6-Methylation in RNA Recognition: Improving Accuracy and Precision of Binding Free Energy Prediction.

Authors: Piomponi V Krepl M Sponer J et al.

Source: The journal of physical chemistry. B [J Phys Chem B] 2024 Sep 19; Vol. 128 (37), pp. 8896-8907. Date of Electronic Publication: 2024 Sep 06.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101157530 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-5207 (Electronic) Linking ISSN: 15205207 NLM ISO Abbreviation: J Phys Chem B Subsets: MEDLINE

Alchemical Metadynamics: Adding Alchemical Variables to Metadynamics to Enhance Sampling in Free Energy Calculations.

Authors: Hsu WT Piomponi V Merz PT et al.

Source: Journal of chemical theory and computation [J Chem Theory Comput] 2023 Mar 28; Vol. 19 (6), pp. 1805-1817. Date of Electronic Publication: 2023 Feb 28.

Publication Type: Journal Article

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101232704 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-9626 (Electronic) Linking ISSN: 15499618 NLM ISO Abbreviation: J Chem Theory Comput Subsets: MEDLINE; PubMed not MEDLINE

Molecular Simulations Matching Denaturation Experiments for N⁶-Methyladenosine.

Authors: Piomponi V Fröhlking T Bernetti M et al.

Source: ACS central science [ACS Cent Sci] 2022 Aug 24; Vol. 8 (8), pp. 1218-1228. Date of Electronic Publication: 2022 Aug 03.

Publication Type: Journal Article

Journal Info: Publisher: ACS Publications Country of Publication: United States NLM ID: 101660035 Publication Model: Print-Electronic Cited Medium: Print ISSN: 2374-7943 (Print) Linking ISSN: 23747943 NLM ISO Abbreviation: ACS Cent Sci Subsets: PubMed not MEDLINE