Search Results - "Plantinga AM"

Benchmarking Differential Abundance Tests for 16S microbiome sequencing data using simulated data based on experimental templates.

Authors: Kohnert, Eva Kreutz, Clemens

Source: PLoS ONE. 5/19/2025, Vol. 20 Issue 5, p1-22. 22p.

Association of physical activity with gut microbiome among low-income black American adults in the Southern Community Cohort Study.

Authors: Shi, Jiajun Nguyen, Sang Minh Yu, Danxia et al.

Source: Gut Microbes Reports. Dec2025, Vol. 2 Issue 1, p1-14. 14p.

Prostate Cancer at the Microbial Crossroads: Illuminating a New Frontier in Precision Medicine.

Authors: Kwon, Whi-An Kim, Heeyeon Song, Yong Sang

Source: World Journal of Men's Health. Jul2026, Vol. 44 Issue 3, p508-532. 25p.

Introducing the UK Crop Microbiome Cryobank data resource, AgMicrobiomeBase, with case studies and methods on metabarcoding analyses.

Authors: Yau, Payton To Taketani, Rodrigo G. Bonnin, J. Miguel et al.

Source: Environmental Microbiome. 8/21/2025, Vol. 20 Issue 1, p1-12. 12p.

The pharmacodynamics-based prophylactic benefits of GLP-1 receptor agonists and SGLT2 inhibitors on neurodegenerative diseases: evidence from a network meta-analysis.

Authors: Tseng, Ping-Tao Zeng, Bing-Yan Hsu, Chih-Wei et al.

Source: BMC Medicine. 4/7/2025, Vol. 23 Issue 1, p1-19. 19p.

Altered molecular signature of the intestinal microbiota in irritable bowel syndrome patients versus healthy controls: An updated systematic review.

Authors: Wang ZZ Chen YK Li X et al.

Source: Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology [Indian J Gastroenterol] 2026 Aug; Vol. 45 (4), pp. 647-665. Date of Electronic Publication: 2025 Dec 18.

Publication Type: Journal Article; Systematic Review; Review

Journal Info: Publisher: Springer India Country of Publication: India NLM ID: 8409436 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 0975-0711 (Electronic) Linking ISSN: 02548860 NLM ISO Abbreviation: Indian J Gastroenterol Subsets: MEDLINE

Mathematical Foundations of Beta Diversity: Why Common Metrics Fail in Microbiome Analysis.

Authors: Zhu, Zihan Zhang, Yiqian Li, Wenhao et al.

Source: Journal of Statistical Theory & Applications. 2/17/2026, Vol. 25 Issue 1, p1-33. 33p.

It's a Women's World: A New Look at Sex Differences in Patients with the Irritable Bowel Syndrome.

Authors: Heath MR Mujagic Z Luo Y et al.

Source: Digestive diseases and sciences [Dig Dis Sci] 2025 Jul; Vol. 70 (7), pp. 2241-2243. Date of Electronic Publication: 2025 Mar 08.

Publication Type: Editorial

Journal Info: Publisher: Springer Science + Business Media Country of Publication: United States NLM ID: 7902782 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1573-2568 (Electronic) Linking ISSN: 01632116 NLM ISO Abbreviation: Dig Dis Sci Subsets: MEDLINE

High abundance of butyrate-producing bacteria in the naso-oropharynx of SARS-CoV-2-infected persons in an African population: implications for low disease severity.

Authors: Akorli, Jewelna Opoku, Millicent Appiah-Twum, Francis et al.

Source: BMC Infectious Diseases. 9/20/2024, Vol. 24 Issue 1, p1-12. 12p.

Rising wildfire risk to houses in the United States, especially in grasslands and shrublands.

Authors: Radeloff, Volker C. Mockrin, Miranda H. Helmers, David et al.

Source: Science (pre-March 2025). 11/10/2023, Vol. 382 Issue 6671, p702-707. 6p. 3 Diagrams.

[1]The human gut microbiota in IBD, characterizing hubs, the core microbiota and terminal nodes: a network-based approach.

Authors: Geese, Theresa Bang, Corinna Franke, Andre et al.

Source: BMC Microbiology. 6/26/2025, Vol. 25 Issue 1, p1-20. 20p.

MicroNet-MIMRF: a microbial network inference approach based on mutual information and Markov random fields.

Authors: Feng, Chenqionglu Jia, Huiqun Wang, Hui et al.

Source: Bioinformatics Advances. 2024, Vol. 4 Issue 1, p1-10. 10p.

Host phenotype classification from human microbiome data is mainly driven by the presence of microbial taxa.

Authors: Giliberti, Renato Cavaliere, Sara Mauriello, Italia Elisa et al.

Source: PLoS Computational Biology. 4/21/2022, Vol. 18 Issue 4, p1-22. 22p. 1 Chart, 6 Graphs.

Age-related dynamics of predominant methanogenic archaea in the human gut microbiome.

Authors: Mohammadzadeh, Rokhsareh Mahnert, Alexander Shinde, Tejus et al.

Source: BMC Microbiology. 4/4/2025, Vol. 25 Issue 1, p1-16. 16p.

A Kernel-based Test of Independence for Cluster-correlated Data.

Authors: Liu H Plantinga AM Xiang Y et al.

Source: Advances in neural information processing systems [Adv Neural Inf Process Syst] 2021 Dec; Vol. 34, pp. 9869-9881.

Publication Type: Journal Article

Journal Info: Publisher: Curran Associates Country of Publication: United States NLM ID: 9607483 Publication Model: Print Cited Medium: Internet ISSN: 1049-5258 (Print) Linking ISSN: 10495258 NLM ISO Abbreviation: Adv Neural Inf Process Syst Subsets: PubMed not MEDLINE

Artificial intelligence in microbiology: implications for metagenomics, diagnostics, and AMR surveillance.

Authors: Khangarot R Kumari V Mishra R et al.

Source: Biomedical engineering online [Biomed Eng Online] 2026 Apr 11; Vol. 25 (1). Date of Electronic Publication: 2026 Apr 11.

Publication Type: Journal Article; Review

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101147518 Publication Model: Electronic Cited Medium: Internet ISSN: 1475-925X (Electronic) Linking ISSN: 1475925X NLM ISO Abbreviation: Biomed Eng Online Subsets: MEDLINE

Integrative clustering by colonic volatile fatty acids reveals microbiota and host physiological variation in weaned piglets.

Authors: Li C Heirbaut S Michiels J et al.

Source: Journal of animal science and biotechnology [J Anim Sci Biotechnol] 2026 Mar 06; Vol. 17 (1). Date of Electronic Publication: 2026 Mar 06.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101581293 Publication Model: Electronic Cited Medium: Print ISSN: 1674-9782 (Print) Linking ISSN: 16749782 NLM ISO Abbreviation: J Anim Sci Biotechnol Subsets: PubMed not MEDLINE

Prospective, longitudinal analysis of the gut microbiome in patients with locally advanced rectal cancer predicts response to neoadjuvant concurrent chemoradiotherapy.

Authors: Sun, Yi Zhang, Xiang Jin, Chuandi et al.

Source: Journal of Translational Medicine. 3/26/2023, Vol. 21 Issue 1, p1-14. 14p.

MiCML: a causal machine learning cloud platform for the analysis of treatment effects using microbiome profiles.

Authors: Koh, Hyunwook Kim, Jihun Jang, Hyojung

Source: BioData Mining. 1/30/2025, Vol. 18 Issue 1, p1-18. 18p.

PhyImpute and UniFracImpute: two imputation approaches incorporating phylogeny information for microbial count data.

Authors: Luo, Qianwen Zhang, Shanshan Butt, Hamza et al.

Source: Briefings in Bioinformatics. Jan2025, Vol. 26 Issue 1, p1-12. 12p.