Search Results - "Plummer JT"

Standardized metrics for assessment and reproducibility of imaging-based spatial transcriptomics datasets.

Authors: Plummer JT Dezem FS Cook DP et al.

Source: Nature biotechnology [Nat Biotechnol] 2026 Jul; Vol. 44 (7), pp. 1213-1225. Date of Electronic Publication: 2025 Dec 03.

Publication Type: Journal Article

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

TimeVault: A molecular time machine for single cells.

Authors: Plummer JT; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Cellular and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, USA; Comprehensive Cancer Center, St. Jude Children's Research Hospital, Memphis, TN, USA. Electronic address: jasmine.plummer@stjude.org.

Source: Molecular cell [Mol Cell] 2026 Mar 19; Vol. 86 (6), pp. 996-997.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print Cited Medium: Internet ISSN: 1097-4164 (Electronic) Linking ISSN: 10972765 NLM ISO Abbreviation: Mol Cell Subsets: MEDLINE

Failure to progress: breast and prostate cancer cell lines in developing targeted therapies.

Authors: James C Whitehead A Plummer JT et al.

Source: Cancer metastasis reviews [Cancer Metastasis Rev] 2024 Dec; Vol. 43 (4), pp. 1529-1548. Date of Electronic Publication: 2024 Jul 26.

Publication Type: Journal Article; Review

Journal Info: Publisher: Kluwer Academic Country of Publication: Netherlands NLM ID: 8605731 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1573-7233 (Electronic) Linking ISSN: 01677659 NLM ISO Abbreviation: Cancer Metastasis Rev Subsets: MEDLINE

GLP-1 Targeting Agents Impair Chemoimmunotherapy Effectiveness in Triple-Negative Breast Cancer.

Authors: Santos B Marção M Durdana I et al.

Source: Research square [Res Sq] 2026 Jan 09. Date of Electronic Publication: 2026 Jan 09.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101768035 Publication Model: Electronic Cited Medium: Internet ISSN: 2693-5015 (Electronic) Linking ISSN: 26935015 NLM ISO Abbreviation: Res Sq Subsets: PubMed not MEDLINE

STAMP: Single-cell transcriptomics analysis and multimodal profiling through imaging.

Authors: Pitino E Pascual-Reguant A Segato-Dezem F et al.

Source: Cell [Cell] 2025 Sep 04; Vol. 188 (18), pp. 5100-5117.e26. Date of Electronic Publication: 2025 Jun 17.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

EZH2-TTP-mTORC1 Axis Drives Phenotypic Plasticity and Therapeutic Vulnerability in Lethal Prostate Cancer.

Authors: German B Morel KL Noel T et al.

Source: Research square [Res Sq] 2025 Aug 21. Date of Electronic Publication: 2025 Aug 21.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101768035 Publication Model: Electronic Cited Medium: Internet ISSN: 2693-5015 (Electronic) Linking ISSN: 26935015 NLM ISO Abbreviation: Res Sq Subsets: PubMed not MEDLINE

EZH2-TTP-mTORC1 Axis Drives Phenotypic Plasticity and Therapeutic Vulnerability in Lethal Prostate Cancer.

Authors: German B Morel KL Noel T et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Aug 11. Date of Electronic Publication: 2025 Aug 11.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

snPATHO-seq: A Detailed Protocol for Single Nucleus RNA Sequencing From FFPE.

Authors: Arjumand W Wise K DuBose H et al.

Source: Bio-protocol [Bio Protoc] 2025 May 05; Vol. 15 (9), pp. e5291. Date of Electronic Publication: 2025 May 05 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Bio-protocol LLC Country of Publication: United States NLM ID: 101635102 Publication Model: eCollection Cited Medium: Internet ISSN: 2331-8325 (Electronic) Linking ISSN: 23318325 NLM ISO Abbreviation: Bio Protoc Subsets: PubMed not MEDLINE

Introducing the Global Alliance for Spatial Technologies (GESTALT).

Authors: Plummer JT Vlachos IS Martelotto LG

Source: Nature genetics [Nat Genet] 2025 Feb; Vol. 57 (2), pp. 275-279.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE; In Process

US Severe Acute Respiratory Syndrome Coronavirus 2 Epsilon Variant: Highly Transmissible but With an Adjusted Muted Host T-Cell Response.

Authors: Plummer JT Contreras D Zhang W et al.

Corporate Authors: Plummer JT Contreras D Zhang W et al.

Source: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America [Clin Infect Dis] 2022 Nov 30; Vol. 75 (11), pp. 1940-1949.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 9203213 Publication Model: Print Cited Medium: Internet ISSN: 1537-6591 (Electronic) Linking ISSN: 10584838 NLM ISO Abbreviation: Clin Infect Dis Subsets: MEDLINE

Copy Number Variants Are Ovarian Cancer Risk Alleles at Known and Novel Risk Loci.

Authors: DeVries AA Dennis J Tyrer JP et al.

Corporate Authors: DeVries AA Dennis J Tyrer JP et al.

Source: Journal of the National Cancer Institute [J Natl Cancer Inst] 2022 Nov 14; Vol. 114 (11), pp. 1533-1544.

Publication Type: Journal Article; Research Support, N.I.H., Intramural; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 7503089 Publication Model: Print Cited Medium: Internet ISSN: 1460-2105 (Electronic) Linking ISSN: 00278874 NLM ISO Abbreviation: J Natl Cancer Inst Subsets: MEDLINE

Low tristetraprolin expression activates phenotypic plasticity and primes transition to lethal prostate cancer in mice.

Authors: Morel KL Germán B Hamid AA et al.

Source: The Journal of clinical investigation [J Clin Invest] 2024 Nov 19; Vol. 135 (2). Date of Electronic Publication: 2024 Nov 19.

Publication Type: Journal Article

Journal Info: Publisher: American Society for Clinical Investigation Country of Publication: United States NLM ID: 7802877 Publication Model: Electronic Cited Medium: Internet ISSN: 1558-8238 (Electronic) Linking ISSN: 00219738 NLM ISO Abbreviation: J Clin Invest Subsets: MEDLINE

Evidence of disrupted rhombic lip development in the pathogenesis of Dandy-Walker malformation.

Authors: Haldipur P Bernardo S Aldinger KA et al.

Source: Acta neuropathologica [Acta Neuropathol] 2021 Oct; Vol. 142 (4), pp. 761-776. Date of Electronic Publication: 2021 Aug 04.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Springer Verlag Country of Publication: Germany NLM ID: 0412041 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-0533 (Electronic) Linking ISSN: 00016322 NLM ISO Abbreviation: Acta Neuropathol Subsets: MEDLINE

An N-Cadherin 2 expressing epithelial cell subpopulation predicts response to surgery, chemotherapy and immunotherapy in bladder cancer.

Authors: Gouin KH 3rd Ing N Plummer JT et al.

Source: Nature communications [Nat Commun] 2021 Aug 12; Vol. 12 (1), pp. 4906. Date of Electronic Publication: 2021 Aug 12.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Integrative multi-omics analyses to identify the genetic and functional mechanisms underlying ovarian cancer risk regions.

Authors: Dareng EO Coetzee SG Tyrer JP et al.

Corporate Authors: Dareng EO Coetzee SG Tyrer JP et al.

Source: American journal of human genetics [Am J Hum Genet] 2024 Jun 06; Vol. 111 (6), pp. 1061-1083. Date of Electronic Publication: 2024 May 08.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0370475 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1537-6605 (Electronic) Linking ISSN: 00029297 NLM ISO Abbreviation: Am J Hum Genet Subsets: MEDLINE

Emergence of a Novel SARS-CoV-2 Variant in Southern California.

Authors: Zhang W Davis BD Chen SS et al.

Source: JAMA [JAMA] 2021 Apr 06; Vol. 325 (13), pp. 1324-1326.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Medical Association Country of Publication: United States NLM ID: 7501160 Publication Model: Print Cited Medium: Internet ISSN: 1538-3598 (Electronic) Linking ISSN: 00987484 NLM ISO Abbreviation: JAMA Subsets: MEDLINE

Analysis of Genomic Characteristics and Transmission Routes of Patients With Confirmed SARS-CoV-2 in Southern California During the Early Stage of the US COVID-19 Pandemic.

Authors: Zhang W Govindavari JP Davis BD et al.

Source: JAMA network open [JAMA Netw Open] 2020 Oct 01; Vol. 3 (10), pp. e2024191. Date of Electronic Publication: 2020 Oct 01.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Medical Association Country of Publication: United States NLM ID: 101729235 Publication Model: Electronic Cited Medium: Internet ISSN: 2574-3805 (Electronic) Linking ISSN: 25743805 NLM ISO Abbreviation: JAMA Netw Open Subsets: MEDLINE

Challenges and Opportunities in Building a Global Representative Single-Cell and Spatial Atlas in Cancer.

Authors: Plummer JT George SHL

Source: Cancer discovery [Cancer Discov] 2023 Sep 06; Vol. 13 (9), pp. 1969-1972.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Association for Cancer Research Country of Publication: United States NLM ID: 101561693 Publication Model: Print Cited Medium: Internet ISSN: 2159-8290 (Electronic) Linking ISSN: 21598274 NLM ISO Abbreviation: Cancer Discov Subsets: MEDLINE

GENAVi: a shiny web application for gene expression normalization, analysis and visualization.

Authors: Reyes ALP Silva TC Coetzee SG et al.

Source: BMC genomics [BMC Genomics] 2019 Oct 16; Vol. 20 (1), pp. 745. Date of Electronic Publication: 2019 Oct 16.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Spatially resolved transcriptomics reveals genes associated with the vulnerability of middle temporal gyrus in Alzheimer's disease.

Authors: Chen S Chang Y Li L et al.

Source: Acta neuropathologica communications [Acta Neuropathol Commun] 2022 Dec 21; Vol. 10 (1), pp. 188. Date of Electronic Publication: 2022 Dec 21.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101610673 Publication Model: Electronic Cited Medium: Internet ISSN: 2051-5960 (Electronic) Linking ISSN: 20515960 NLM ISO Abbreviation: Acta Neuropathol Commun Subsets: MEDLINE