Search Results - "Protein structure"

A unique approach for protein secondary structure comparison under TOPS representation.

Authors: Pal D Dey S Ghosh P et al.

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2025 Nov; Vol. 43 (18), pp. 10398-10410. Date of Electronic Publication: 2024 May 03.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Conformational plasticity and truncational effects on bovine lactoferricin: structural determinants of enhanced antimicrobial activity.

Authors: Pei J Xiong L Ge Q et al.

Source: Frontiers in cellular and infection microbiology [Front Cell Infect Microbiol] 2026 Jul 10; Vol. 16, pp. 1888171. Date of Electronic Publication: 2026 Jul 10 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Media SA Country of Publication: Switzerland NLM ID: 101585359 Publication Model: eCollection Cited Medium: Internet ISSN: 2235-2988 (Electronic) Linking ISSN: 22352988 NLM ISO Abbreviation: Front Cell Infect Microbiol Subsets: MEDLINE

Microscopic effects of proline co-solvent on alanine homopeptide structure, solvation and helix folding dynamics.

Authors: Kuczera K Szoszkiewicz R Jas GS

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 Jul; Vol. 44 (10), pp. 4810-4820. Date of Electronic Publication: 2025 May 12.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

pH modulates amyloid-β42 conformation in lipid membranes: evidence from circular dichroism, Raman spectroscopy, and molecular dynamics simulations.

Authors: Abdeljawaad KAA Arynbek Y Mamatkulov K et al.

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 Jul; Vol. 44 (11), pp. 5189-5204. Date of Electronic Publication: 2025 Oct 14.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Long chain fatty acid and ketone arise albumin structure recovery caused by furosemide.

Authors: Wei Y Zhou N

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 Jul; Vol. 44 (10), pp. 4839-4852. Date of Electronic Publication: 2025 Jun 09.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Unraveling the structural dynamics of Aβ42 monomer: insights from K16A and K16A + K28A mutations through molecular dynamics simulations.

Authors: Xia K Tian W Xu H et al.

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 Jul; Vol. 44 (11), pp. 5073-5088. Date of Electronic Publication: 2025 Sep 16.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Chameleon sequences reveal structural effects in proteins representing micelle-like distribution of hydrophobicity.

Authors: Roterman I Stapor K Konieczny L et al.

Source: FEBS open bio [FEBS Open Bio] 2026 Jul; Vol. 16 (7), pp. 1340-1357. Date of Electronic Publication: 2026 Feb 17.

Publication Type: Journal Article

Journal Info: Publisher: John Wiley & Sons Ltd Country of Publication: England NLM ID: 101580716 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-5463 (Electronic) Linking ISSN: 22115463 NLM ISO Abbreviation: FEBS Open Bio Subsets: MEDLINE

Investigating PFOS-induced structural changes and aggregation in hen egg white lysozyme: spectroscopic and molecular insights.

Authors: Dudure R Joshi R Pritam P et al.

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 Jul; Vol. 44 (11), pp. 5089-5107. Date of Electronic Publication: 2025 Sep 12.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Prothrombinase processivity is conferred by substrate allostery.

Authors: Üstok FI Faille A Warren AJ et al.

Source: The EMBO journal [EMBO J] 2026 Jun; Vol. 45 (11), pp. 3954-3977. Date of Electronic Publication: 2026 Apr 22.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 8208664 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1460-2075 (Electronic) Linking ISSN: 02614189 NLM ISO Abbreviation: EMBO J Subsets: MEDLINE

Prediction and quality assessment of protein quaternary structure models using the MultiFOLD2 and ModFOLDdock2 servers.

Authors: McGuffin LJ Alhaddad SN Behzadi B et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Jul 07; Vol. 53 (W1), pp. W472-W477.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

A Novel Machine-Learning Based Method for Resolving Secondary Structure Topology in Medium-Resolution Cryo-EM Density Maps.

Authors: Behkamal B Etemadheravi MP Mahmoodjanloo A et al.

Source: International journal of molecular sciences [Int J Mol Sci] 2026 May 14; Vol. 27 (10). Date of Electronic Publication: 2026 May 14.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

A New Alignment-Free Approach to Compare Protein Secondary Structure Families Through SSEs.

Authors: Pal D Ghosh P Das S et al.

Source: IEEE transactions on computational biology and bioinformatics [IEEE Trans Comput Biol Bioinform] 2026 May-Jun; Vol. 23 (3), pp. 1331-1342.

Publication Type: Journal Article

Journal Info: Publisher: IEEE Country of Publication: United States NLM ID: 9919068173606676 Publication Model: Print Cited Medium: Internet ISSN: 2998-4165 (Electronic) Linking ISSN: 29984165 NLM ISO Abbreviation: IEEE Trans Comput Biol Bioinform Subsets: MEDLINE

GraphUnet-SS: A novel deep learning model for protein secondary structure prediction based on U-Net architecture.

Authors: Görmez Y Sabzekar M Aydin Z

Source: Computers in biology and medicine [Comput Biol Med] 2026 Apr 01; Vol. 205, pp. 111598. Date of Electronic Publication: 2026 Feb 27.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 1250250 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0534 (Electronic) Linking ISSN: 00104825 NLM ISO Abbreviation: Comput Biol Med Subsets: MEDLINE

SSE-TSR: An Approach to Integrate Secondary Structure Elements Into Triangular Spatial Relationships for Protein Classification.

Authors: Khajouie P Sarkar T Rauniyar K et al.

Source: IEEE transactions on computational biology and bioinformatics [IEEE Trans Comput Biol Bioinform] 2026 Mar-Apr; Vol. 23 (2), pp. 694-703.

Publication Type: Journal Article

Journal Info: Publisher: IEEE Country of Publication: United States NLM ID: 9919068173606676 Publication Model: Print Cited Medium: Internet ISSN: 2998-4165 (Electronic) Linking ISSN: 29984165 NLM ISO Abbreviation: IEEE Trans Comput Biol Bioinform Subsets: MEDLINE

Multiple protein structure alignment at scale with FoldMason.

Authors: Gilchrist, Cameron L. M. Mirdita, Milot Steinegger, Martin

Source: Science. 1/29/2026, Vol. 391 Issue 6784, p485-488. 4p.

A comprehensive guide for secondary structure and tertiary structure determination in peptides and proteins by circular dichroism spectrometer.

Authors: Kuril AK Vashi A Subbappa PK

Source: Journal of peptide science : an official publication of the European Peptide Society [J Pept Sci] 2025 Jan; Vol. 31 (1), pp. e3648. Date of Electronic Publication: 2024 Aug 12.

Publication Type: Journal Article; Review

Journal Info: Publisher: John Wiley & Sons Country of Publication: England NLM ID: 9506309 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1099-1387 (Electronic) Linking ISSN: 10752617 NLM ISO Abbreviation: J Pept Sci Subsets: MEDLINE

CONSTRUCT: an algorithmic tool for identifying functional or structurally important regions in protein tertiary structure.

Authors: Chivot L Mathieux N Cosson A et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2025 Mar 29; Vol. 41 (4).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

A bacterial-type cardiolipin synthase in Plasmodium spp. supports mitochondrial respiration and is important for liver stage maturation.

Authors: Adhur KA Nirdosh N Chandramouli A et al.

Source: PLoS pathogens [PLoS Pathog] 2026 May 11; Vol. 22 (5), pp. e1014215. Date of Electronic Publication: 2026 May 11 (Print Publication: 2026).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE

Molecular insights into particular mutations impact on Taq polymerase dynamics and structure: a molecular dynamics simulation study.

Authors: Borhani S Arab SS

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 May; Vol. 44 (8), pp. 3780-3793. Date of Electronic Publication: 2025 Jul 25.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Conformational dynamics of the membrane protein of MERS-CoV in comparison with SARS-CoV-2 in ERGIC complex.

Authors: Yegnaswamy S C SK Aldaais E

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 Apr; Vol. 44 (6), pp. 2975-2989. Date of Electronic Publication: 2025 Jan 05.

Publication Type: Journal Article; Comparative Study

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE