Search Results - "Pyke RM"

Broad Utility of Ultrasensitive Analysis of ctDNA Dynamics across Solid Tumors Treated with Immunotherapy.

Authors: Garralda E Abbott C Calahorro A et al.

Source: Clinical cancer research : an official journal of the American Association for Cancer Research [Clin Cancer Res] 2026 Jan 16; Vol. 32 (2), pp. 333-349.

Publication Type: Journal Article

Journal Info: Publisher: American Association for Cancer Research Country of Publication: United States NLM ID: 9502500 Publication Model: Print Cited Medium: Internet ISSN: 1557-3265 (Electronic) Linking ISSN: 10780432 NLM ISO Abbreviation: Clin Cancer Res Subsets: MEDLINE

Longitudinal ultrasensitive ctDNA monitoring for high-resolution lung cancer risk prediction.

Authors: Black JRM Karasaki T Abbott CW et al.

Corporate Authors: Black JRM Karasaki T Abbott CW et al.

Source: Cell [Cell] 2025 Dec 11; Vol. 188 (25), pp. 7083-7098.e18. Date of Electronic Publication: 2025 Nov 07.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

Whole genome sequencing-powered ctDNA sequencing for breast cancer detection.

Authors: Garcia-Murillas I Abbott CW Cutts RJ et al.

Source: Annals of oncology : official journal of the European Society for Medical Oncology [Ann Oncol] 2025 Jun; Vol. 36 (6), pp. 673-681. Date of Electronic Publication: 2025 Feb 04.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: England NLM ID: 9007735 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1569-8041 (Electronic) Linking ISSN: 09237534 NLM ISO Abbreviation: Ann Oncol Subsets: MEDLINE

Ultrasensitive ctDNA detection for preoperative disease stratification in early-stage lung adenocarcinoma.

Authors: Black JRM Bartha G Abbott CW et al.

Corporate Authors: Black JRM Bartha G Abbott CW et al.

Source: Nature medicine [Nat Med] 2025 Jan; Vol. 31 (1), pp. 70-76. Date of Electronic Publication: 2025 Jan 13.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Company Country of Publication: United States NLM ID: 9502015 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-170X (Electronic) Linking ISSN: 10788956 NLM ISO Abbreviation: Nat Med Subsets: MEDLINE

Correction: Analytical validation of NeXT Personal®, an ultra-sensitive personalized circulating tumor DNA assay.

Authors: Northcott J Bartha G Harris J et al.

Source: Oncotarget [Oncotarget] 2024 Jun 20; Vol. 15, pp. 407. Date of Electronic Publication: 2024 Jun 20.

Publication Type: Editorial; Published Erratum

Journal Info: Publisher: Impact Journals Country of Publication: United States NLM ID: 101532965 Publication Model: Electronic Cited Medium: Internet ISSN: 1949-2553 (Electronic) Linking ISSN: 19492553 NLM ISO Abbreviation: Oncotarget Subsets: PubMed not MEDLINE

Analytical validation of NeXT Personal®, an ultra-sensitive personalized circulating tumor DNA assay.

Authors: Northcott J Bartha G Harris J et al.

Source: Oncotarget [Oncotarget] 2024 Mar 14; Vol. 15, pp. 200-218. Date of Electronic Publication: 2024 Mar 14.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Impact Journals Country of Publication: United States NLM ID: 101532965 Publication Model: Electronic Cited Medium: Internet ISSN: 1949-2553 (Electronic) Linking ISSN: 19492553 NLM ISO Abbreviation: Oncotarget Subsets: MEDLINE

Strength of immune selection in tumors varies with sex and age.

Authors: Castro A Pyke RM Zhang X et al.

Source: Nature communications [Nat Commun] 2020 Aug 17; Vol. 11 (1), pp. 4128. Date of Electronic Publication: 2020 Aug 17.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Withdrawal of 'Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation'.

Authors: Pyke RM Mellacheruvu D Dea S et al.

Source: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2023 Apr; Vol. 22 (4), pp. 100511. Date of Electronic Publication: 2023 Apr 03.

Publication Type: Journal Article; Retraction Notice

Journal Info: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 101125647 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-9484 (Electronic) Linking ISSN: 15359476 NLM ISO Abbreviation: Mol Cell Proteomics Subsets: MEDLINE; PubMed not MEDLINE

Precision Neoantigen Discovery Using Large-Scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation.

Authors: Pyke RM Mellacheruvu D Dea S et al.

Source: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2023 Apr; Vol. 22 (4), pp. 100506. Date of Electronic Publication: 2023 Feb 14.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Corrected and Republished Article

Journal Info: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 101125647 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-9484 (Electronic) Linking ISSN: 15359476 NLM ISO Abbreviation: Mol Cell Proteomics Subsets: MEDLINE

Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes.

Authors: Castro A Ozturk K Pyke RM et al.

Source: BMC medical genomics [BMC Med Genomics] 2019 Jul 25; Vol. 12 (Suppl 6), pp. 107. Date of Electronic Publication: 2019 Jul 25.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium: Internet ISSN: 1755-8794 (Electronic) Linking ISSN: 17558794 NLM ISO Abbreviation: BMC Med Genomics Subsets: MEDLINE

A machine learning algorithm with subclonal sensitivity reveals widespread pan-cancer human leukocyte antigen loss of heterozygosity.

Authors: Pyke RM Mellacheruvu D Dea S et al.

Source: Nature communications [Nat Commun] 2022 Apr 12; Vol. 13 (1), pp. 1925. Date of Electronic Publication: 2022 Apr 12.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Prediction of Immunotherapy Response in Melanoma through Combined Modeling of Neoantigen Burden and Immune-Related Resistance Mechanisms.

Authors: Abbott CW Boyle SM Pyke RM et al.

Source: Clinical cancer research : an official journal of the American Association for Cancer Research [Clin Cancer Res] 2021 Aug 01; Vol. 27 (15), pp. 4265-4276.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Association for Cancer Research Country of Publication: United States NLM ID: 9502500 Publication Model: Print Cited Medium: Internet ISSN: 1557-3265 (Electronic) Linking ISSN: 10780432 NLM ISO Abbreviation: Clin Cancer Res Subsets: MEDLINE

Withdrawn: Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation.

Authors: Pyke RM Mellacheruvu D Dea S et al.

Source: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2021; Vol. 20, pp. 100111. Date of Electronic Publication: 2021 Jun 12.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Retracted Publication

Journal Info: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 101125647 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-9484 (Electronic) Linking ISSN: 15359476 NLM ISO Abbreviation: Mol Cell Proteomics Subsets: MEDLINE

MHC-I genotype and tumor mutational burden predict response to immunotherapy.

Authors: Goodman AM Castro A Pyke RM et al.

Source: Genome medicine [Genome Med] 2020 May 19; Vol. 12 (1), pp. 45. Date of Electronic Publication: 2020 May 19.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-994X (Electronic) Linking ISSN: 1756994X NLM ISO Abbreviation: Genome Med Subsets: MEDLINE

Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival.

Authors: Pyke RM Genolet R Harari A et al.

Source: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing [Pac Symp Biocomput] 2019; Vol. 24, pp. 148-159.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: World Scientific Country of Publication: United States NLM ID: 9711271 Publication Model: Print Cited Medium: Internet ISSN: 2335-6936 (Electronic) Linking ISSN: 23356928 NLM ISO Abbreviation: Pac Symp Biocomput

Integrative genomic analysis of mouse and human hepatocellular carcinoma.

Authors: Dow M Pyke RM Tsui BY et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2018 Oct 16; Vol. 115 (42), pp. E9879-E9888. Date of Electronic Publication: 2018 Oct 04.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE