Search Results - "Rademaker DT"

A high-speed attention network for MHC-bound peptide identification and 3D modeling.

Authors: Baakman CAB Crocioni G Geng C et al.

Source: Cell reports methods [Cell Rep Methods] 2026 Apr 20; Vol. 6 (4), pp. 101364. Date of Electronic Publication: 2026 Mar 31.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 9918227360606676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2667-2375 (Electronic) Linking ISSN: 26672375 NLM ISO Abbreviation: Cell Rep Methods Subsets: MEDLINE

Predicting reverse-bound peptide conformations in MHC Class II with PANDORA.

Authors: Rademaker DT Parizi FM van Vreeswijk M et al.

Source: Frontiers in immunology [Front Immunol] 2025 Mar 24; Vol. 16, pp. 1525576. Date of Electronic Publication: 2025 Mar 24 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE

Author Correction: Geometric deep learning improves generalizability of MHC-bound peptide predictions.

Authors: Marzella DF Crocioni G Radusinović T et al.

Source: Communications biology [Commun Biol] 2025 Jul 05; Vol. 8 (1), pp. 1007. Date of Electronic Publication: 2025 Jul 05.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE; PubMed not MEDLINE

GradPose: a very fast and memory-efficient gradient descent-based tool for superimposing millions of protein structures from computational simulations.

Authors: Rademaker DT van Geemen KJ Xue LC

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Aug 01; Vol. 39 (8).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Geometric deep learning improves generalizability of MHC-bound peptide predictions.

Authors: Marzella DF Crocioni G Radusinović T et al.

Source: Communications biology [Commun Biol] 2024 Dec 19; Vol. 7 (1), pp. 1661. Date of Electronic Publication: 2024 Dec 19.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

PANDORA: A Fast, Anchor-Restrained Modelling Protocol for Peptide: MHC Complexes.

Authors: Marzella DF Parizi FM van Tilborg D et al.

Source: Frontiers in immunology [Front Immunol] 2022 May 10; Vol. 13, pp. 878762. Date of Electronic Publication: 2022 May 10 (Print Publication: 2022).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE

Quantifying the deformability of malaria-infected red blood cells using deep learning trained on synthetic cells.

Authors: Rademaker DT Koopmans JJ Thyen GMSM et al.

Source: IScience [iScience] 2023 Nov 23; Vol. 26 (12), pp. 108542. Date of Electronic Publication: 2023 Nov 23 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101724038 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-0042 (Electronic) Linking ISSN: 25890042 NLM ISO Abbreviation: iScience Subsets: PubMed not MEDLINE

Entropy and Variability: A Second Opinion by Deep Learning.

Authors: Rademaker DT Xue LC 't Hoen PAC et al.

Source: Biomolecules [Biomolecules] 2022 Nov 23; Vol. 12 (12). Date of Electronic Publication: 2022 Nov 23.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X (Electronic) Linking ISSN: 2218273X NLM ISO Abbreviation: Biomolecules Subsets: MEDLINE