Search Results - "Rochereau C"

Trainable subnetworks reveal insights into structure knowledge organization in protein language models.

Authors: Vinod, Ria Amini, Ava P. Crawford, Lorin et al.

Source: PLoS Computational Biology. 2/9/2026, Vol. 22 Issue 2, p1-17. 17p.

Scalable and Efficient Protein Secondary Structure Prediction Using Autoencoder-Reduced ProtBERT Embeddings.

Authors: Al-Shameri, Yahya Najib Hamood Kösesoy, İrfan Gündüz, Hakan et al.

Source: Applied Sciences (2076-3417); Jul2025, Vol. 15 Issue 13, p7112, 18p

Comparing In Silico Fungi Toxicity Prediction with In Vitro Cytotoxicity Assay for Indoor Airborne Fungi.

Authors: Ahn, Sung-Yoon Kim, Mira Jeong, Hye-Won et al.

Source: Applied Sciences (2076-3417); Feb2024, Vol. 14 Issue 3, p1265, 12p

A protein-specific priority code in presequences determines the efficiency of mitochondrial protein import.

Authors: Rödl, Saskia Hoffman, Yasmin Jung, Felix et al.

Source: PLoS Biology. 7/21/2025, Vol. 23 Issue 7, p1-29. 29p.

BertADP: a fine-tuned protein language model for anti-diabetic peptide prediction.

Authors: Xie, Xueqin Wu, Changchun Qi, Yixuan et al.

Source: BMC Biology. 7/15/2025, Vol. 23 Issue 1, p1-14. 14p.

ThermoFormer: Predicting Protein Melting Temperature Through Large-Scale Pretraining.

Authors: Li, Jingchuan Li, Mingchen

Source: Catalysts (2073-4344). Apr2026, Vol. 16 Issue 4, p288. 20p.

A Comparative Review of Artificial Intelligence Applications in Small Molecule Versus Peptide Drug Discovery.

Authors: Lin, Han Vogel, Horst Zhang, Huawei

Source: International Journal of Molecular Sciences. Apr2026, Vol. 27 Issue 7, p3142. 23p.

Programming Next‐Generation Synthetic Biosensors by Genetic Circuit Design.

Authors: Gao, Yuanli Huang, Cheng Deng, Jiaxuan et al.

Source: Advanced Science. 3/9/2026, Vol. 13 Issue 14, p1-33. 33p.

Large-scale multi-omic biosequence transformers for modeling protein–nucleic acid interactions.

Authors: Chen, Sully F. Steele, Robert J. Hocky, Glen M. et al.

Source: PLoS ONE. 2/2/2026, Vol. 21 Issue 2, p1-23. 23p.

MPIDNN-GPPI: multi-protein language model with an improved deep neural network for generalized protein‒protein interaction prediction.

Authors: Li, Yane Wang, Chengfeng Gu, Haibo et al.

Source: BMC Genomics. 11/19/2025, Vol. 26 Issue 1, p1-14. 14p.

Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment.

Authors: Malbranke, Cyril Rostain, William Depardieu, Florence et al.

Source: PLoS Computational Biology. 11/17/2023, Vol. 19 Issue 11, p1-25. 25p.

A billion years of evolution manifest in nanosecond protein dynamics.

Authors: Heckmeier PJ Ruf J Rochereau C et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Mar 05; Vol. 121 (10), pp. e2318743121. Date of Electronic Publication: 2024 Feb 27.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

3DVizSNP: a tool for rapidly visualizing missense mutations identified in high throughput experiments in iCn3D.

Authors: Sierk, Michael Ratnayake, Shashikala Wagle, Manoj M. et al.

Source: BMC Bioinformatics. 6/9/2023, Vol. 24 Issue 1, p1-9. 9p.

Sequence-Based Protein–Protein Interaction Prediction and Its Applications in Drug Discovery.

Authors: Charih, François Green, James R. Biggar, Kyle K.

Source: Cells (2073-4409). Sep2025, Vol. 14 Issue 18, p1449. 31p.

PREFMoDeL: A Systematic Review and Proposed Taxonomy of Biomolecular Features for Deep Learning.

Authors: North, Jacob L. Hsu, Victor L.

Source: Applied Sciences (2076-3417); Apr2023, Vol. 13 Issue 7, p4356, 25p

LiST: A Lightweight Framework for Continuous Indian Sign Language Translation.

Authors: K, Amrutha P, Prabu Poonia, Ramesh Chandra

Source: Information. Feb2023, Vol. 14 Issue 2, p79. 21p.

KmalPred: a deep learning framework for lysine malonylation site prediction using protein language model representations.

Authors: Jiao S Ao C Zou Q et al.

Source: BMC biology [BMC Biol] 2026 May 19; Vol. 24 (1). Date of Electronic Publication: 2026 May 19.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7007 (Electronic) Linking ISSN: 17417007 NLM ISO Abbreviation: BMC Biol Subsets: MEDLINE

Protein foundation models: a comprehensive survey.

Authors: Xu H Li L Pan S et al.

Source: Science China. Life sciences [Sci China Life Sci] 2026 May; Vol. 69 (5), pp. 1503-1531. Date of Electronic Publication: 2026 Jan 05.

Publication Type: Journal Article; Review

Journal Info: Publisher: Science China Press, co-published with Springer Country of Publication: China NLM ID: 101529880 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1869-1889 (Electronic) Linking ISSN: 16747305 NLM ISO Abbreviation: Sci China Life Sci Subsets: MEDLINE

Explainability of Protein Deep Learning Models.

Authors: Fazel, Zahra de Souza, Camila P. E. Golding, G. Brian et al.

Source: International Journal of Molecular Sciences. Jun2025, Vol. 26 Issue 11, p5255. 21p.

A Proposal for a Consolidated Structural Model of the CagY Protein of Helicobacter pylori.

Authors: López-Luis, Mario Angel Soriano-Pérez, Eva Elda Parada-Fabián, José Carlos et al.

Source: International Journal of Molecular Sciences. Dec2023, Vol. 24 Issue 23, p16781. 19p.