Search Results - "Rodriguez-R LM"

An ANIr-based methodology to determine if two sequence-discrete populations are identical and identify cosmopolitan prokaryotic populations.

Authors: Conrad RE Rodriguez-R LM Lindner BG et al.

Source: ISME communications [ISME Commun] 2026 Mar 21; Vol. 6 (1), pp. ycag068. Date of Electronic Publication: 2026 Mar 21 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9918205372406676 Publication Model: eCollection Cited Medium: Internet ISSN: 2730-6151 (Electronic) Linking ISSN: 27306151 NLM ISO Abbreviation: ISME Commun Subsets: PubMed not MEDLINE

FastAAI: efficient estimation of genome average amino acid identity and phylum-level relationships using tetramers of universal proteins.

Authors: Gerhardt K Ruiz-Perez CA Rodriguez-R LM et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Apr 22; Vol. 53 (8).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination.

Authors: Conrad RE Brink CE Viver T et al.

Source: Nature communications [Nat Commun] 2024 Nov 15; Vol. 15 (1), pp. 9906. Date of Electronic Publication: 2024 Nov 15.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Request for public discussion and ballot to add rules on paratypes to the SeqCode and amend recommendations on name formation.

Authors: Whitman WB Sutcliffe I Konstantinidis KT et al.

Source: ISME communications [ISME Commun] 2026 Jan 10; Vol. 6 (1), pp. ycaf238. Date of Electronic Publication: 2026 Jan 10 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9918205372406676 Publication Model: eCollection Cited Medium: Internet ISSN: 2730-6151 (Electronic) Linking ISSN: 27306151 NLM ISO Abbreviation: ISME Commun Subsets: PubMed not MEDLINE

Uneven sequencing (coverage) depth can bias microbial intraspecies diversity estimates and how to account for it.

Authors: Bustos-Caparros E Viver T Gago JF et al.

Source: ISME communications [ISME Commun] 2025 Dec 06; Vol. 5 (1), pp. ycaf228. Date of Electronic Publication: 2025 Dec 06 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9918205372406676 Publication Model: eCollection Cited Medium: Internet ISSN: 2730-6151 (Electronic) Linking ISSN: 27306151 NLM ISO Abbreviation: ISME Commun Subsets: PubMed not MEDLINE

Probiotic Potential of Yeast, Mold, and Intermediate Morphotypes of Geotrichum candidum in Modulating Gut Microbiota and Body Physiology in Mice.

Authors: Gohar M Shaheen N Goyal SM et al.

Source: Probiotics and antimicrobial proteins [Probiotics Antimicrob Proteins] 2025 Dec; Vol. 17 (6), pp. 5326-5344. Date of Electronic Publication: 2025 Mar 04.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: United States NLM ID: 101484100 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1867-1314 (Electronic) Linking ISSN: 18671306 NLM ISO Abbreviation: Probiotics Antimicrob Proteins Subsets: MEDLINE

GSearch: ultra-fast and scalable genome search by combining K-mer hashing with hierarchical navigable small world graphs.

Authors: Zhao J Both JP Rodriguez-R LM et al.

Source: Nucleic acids research [Nucleic Acids Res] 2024 Sep 09; Vol. 52 (16), pp. e74.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance.

Authors: Rodríguez-Gijón A Pacheco-Valenciana A Milke F et al.

Source: Scientific reports [Sci Rep] 2025 Oct 03; Vol. 15 (1), pp. 34482. Date of Electronic Publication: 2025 Oct 03.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

Differences in metagenome coverage may confound abundance-based and diversity conclusions and how to deal with them.

Authors: Aldeguer-Riquelme B Rodriguez-R LM Konstantinidis KT

Source: ISME communications [ISME Commun] 2025 Sep 10; Vol. 5 (1), pp. ycaf140. Date of Electronic Publication: 2025 Sep 10 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9918205372406676 Publication Model: eCollection Cited Medium: Internet ISSN: 2730-6151 (Electronic) Linking ISSN: 27306151 NLM ISO Abbreviation: ISME Commun Subsets: PubMed not MEDLINE

A practical guide on environmental genomics for prokaryotic systematics.

Authors: Ernster NM Rodriguez-R LM

Source: Systematic and applied microbiology [Syst Appl Microbiol] 2025 Sep; Vol. 48 (5), pp. 126643. Date of Electronic Publication: 2025 Aug 05.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier GmbH Country of Publication: Germany NLM ID: 8306133 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1618-0984 (Electronic) Linking ISSN: 07232020 NLM ISO Abbreviation: Syst Appl Microbiol Subsets: MEDLINE

Towards estimating the number of strains that make up a natural bacterial population.

Authors: Viver T Conrad RE Rodriguez-R LM et al.

Source: Nature communications [Nat Commun] 2024 Jan 16; Vol. 15 (1), pp. 544. Date of Electronic Publication: 2024 Jan 16.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Determinism and stochasticity drive microbial community assembly and microbial interactions in calcareous glacier forefields.

Authors: Mandolini E Probst M Telagathoti A et al.

Source: Applied and environmental microbiology [Appl Environ Microbiol] 2025 Jun 18; Vol. 91 (6), pp. e0030225. Date of Electronic Publication: 2025 May 15.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 7605801 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1098-5336 (Electronic) Linking ISSN: 00992240 NLM ISO Abbreviation: Appl Environ Microbiol Subsets: MEDLINE

Earth's most needed uncultivated aquatic prokaryotes.

Authors: Simon SA Aschmann V Behrendt A et al.

Source: Water research [Water Res] 2025 Apr 01; Vol. 273, pp. 122928. Date of Electronic Publication: 2024 Dec 09.

Publication Type: Journal Article; Review

Journal Info: Publisher: Pergamon Press Country of Publication: England NLM ID: 0105072 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2448 (Electronic) Linking ISSN: 00431354 NLM ISO Abbreviation: Water Res Subsets: MEDLINE

Global dominance of Haloquadratum walsbyi by a single genomovar with distinct gene content and viral cohorts from close relatives.

Authors: Bustos-Caparros E Viver T Gago JF et al.

Source: The ISME journal [ISME J] 2025 Jan 02; Vol. 19 (1).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101301086 Publication Model: Print Cited Medium: Internet ISSN: 1751-7370 (Electronic) Linking ISSN: 17517362 NLM ISO Abbreviation: ISME J Subsets: MEDLINE

Discovery and cultivation of prokaryotic taxa in the age of metagenomics and artificial intelligence.

Authors: Jiménez DJ Marasco R Schultz J et al.

Source: The ISME journal [ISME J] 2025 Jan 02; Vol. 20 (1).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101301086 Publication Model: Print Cited Medium: Internet ISSN: 1751-7370 (Electronic) Linking ISSN: 17517362 NLM ISO Abbreviation: ISME J Subsets: MEDLINE; PubMed not MEDLINE

Promiscuous and genome-wide recombination underlies the sequence-discrete species of the SAR11 lineage in the deep ocean.

Authors: Zhao J Pachiadaki M Conrad RE et al.

Source: The ISME journal [ISME J] 2025 Jan 02; Vol. 19 (1).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101301086 Publication Model: Print Cited Medium: Internet ISSN: 1751-7370 (Electronic) Linking ISSN: 17517362 NLM ISO Abbreviation: ISME J Subsets: MEDLINE

Quantifying the contribution of the rare biosphere to natural disturbances.

Authors: Zhao J Brandt G Gronniger JL et al.

Source: The ISME journal [ISME J] 2025 Jan 02; Vol. 19 (1).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101301086 Publication Model: Print Cited Medium: Internet ISSN: 1751-7370 (Electronic) Linking ISSN: 17517362 NLM ISO Abbreviation: ISME J Subsets: MEDLINE

Options and considerations for validation of prokaryotic names under the SeqCode.

Authors: Venter SN Rodriguez-R LM Chuvochina M et al.

Source: Systematic and applied microbiology [Syst Appl Microbiol] 2024 Nov; Vol. 47 (6), pp. 126554. Date of Electronic Publication: 2024 Sep 19.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier GmbH Country of Publication: Germany NLM ID: 8306133 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1618-0984 (Electronic) Linking ISSN: 07232020 NLM ISO Abbreviation: Syst Appl Microbiol Subsets: MEDLINE

Quis custodiet ipsos custodes? A call for community participation in the governance of the SeqCode.

Authors: Sutcliffe IC Rodriguez-R LM Venter SN et al.

Source: Systematic and applied microbiology [Syst Appl Microbiol] 2024 May; Vol. 47 (2-3), pp. 126498. Date of Electronic Publication: 2024 Feb 24.

Publication Type: Journal Article; Review

Journal Info: Publisher: Elsevier GmbH Country of Publication: Germany NLM ID: 8306133 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1618-0984 (Electronic) Linking ISSN: 07232020 NLM ISO Abbreviation: Syst Appl Microbiol Subsets: MEDLINE

Why and how to use the SeqCode.

Authors: Whitman WB Chuvochina M Hedlund BP et al.

Source: MLife [mLife] 2024 Feb 07; Vol. 3 (1), pp. 1-13. Date of Electronic Publication: 2024 Feb 07 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: John Wiley & Sons Australia, Ltd. on behalf of Institute of Microbiology, Chinese Academy of Sciences Country of Publication: Australia NLM ID: 9918680586806676 Publication Model: eCollection Cited Medium: Internet ISSN: 2770-100X (Electronic) Linking ISSN: 2770100X NLM ISO Abbreviation: mLife Subsets: PubMed not MEDLINE